mRNA_P-littoralis_Contig145.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.63.1
Unique NamemRNA_P-littoralis_Contig145.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.440e-47
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 MGGDH-GMEGKATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            MGGDH GMEGKATEEEMVAAKMP+AFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFK+RK MMKESKE
Sbjct:    1 MGGDHDGMEGKATEEEMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKERKAMMKESKE 78
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A0G4MZR7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=7 Tax=Plectosphaerellaceae TaxID=1033978 RepID=A0A0G4MZR7_9PEZI)

HSP 1 Score: 102 bits (254), Expect = 6.710e-27
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 MGGDHGMEGKATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKE 222
            MG D+  +G AT EEM  A++PLA+RDSCAHLL+PLN+CR  T YLPW+CS ERH YEKCQY +FK R   M E
Sbjct:    1 MGSDNAPKGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEEFKKRVAKMDE 74
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BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: G9MJU7_HYPVG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Hypocreales TaxID=5125 RepID=G9MJU7_HYPVG)

HSP 1 Score: 102 bits (254), Expect = 6.900e-27
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 MGGDHGMEGK-ATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            M  D   EG+ AT EEM  A++PLA+RDSCAHLL+PLNKCRR T Y PW+CS ERH YEKCQY++FK R   M E +E
Sbjct:    1 MASDAATEGRQATREEMRDARLPLAYRDSCAHLLIPLNKCRRETWYAPWKCSDERHSYEKCQYVEFKKRVAKMNELRE 78
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: I1S5X9_GIBZE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=10 Tax=Fusarium TaxID=5506 RepID=I1S5X9_GIBZE)

HSP 1 Score: 102 bits (253), Expect = 9.810e-27
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   28 KATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            +AT EEM  AK+PLA+RDSCAHLL+PLNKCRR T Y PW+CS ERH YEKCQY++FK R   M E +E
Sbjct:   11 QATREEMRDAKLPLAYRDSCAHLLIPLNKCRRDTWYAPWKCSDERHSYEKCQYVEFKKRVAKMDELRE 78
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A0G4N0K7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4N0K7_9PEZI)

HSP 1 Score: 101 bits (252), Expect = 1.350e-26
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 MGGDHGMEGKATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKE 222
            MG D+   G AT EEM  A++PLA+RDSCAHLL+PLN+CR  T YLPW+CS ERH YEKCQY +FK R   M E
Sbjct:    1 MGSDNAPTGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEEFKKRVAKMDE 74
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A0W7VSI5_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Trichoderma TaxID=5543 RepID=A0A0W7VSI5_9HYPO)

HSP 1 Score: 101 bits (251), Expect = 1.980e-26
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   28 KATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            +AT EEM  AK+PLA+RDSCAHLL+PLNKCRR T Y PW+C+ ERH YEKCQY++FK R   M E +E
Sbjct:   11 QATREEMRDAKLPLAYRDSCAHLLIPLNKCRRETWYAPWKCTDERHSYEKCQYVEFKKRVAKMNELRE 78
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A420YNW9_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YNW9_9PEZI)

HSP 1 Score: 101 bits (251), Expect = 2.030e-26
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   28 KATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            +AT EEM AAK+PLA+RDSCAHLL+PLN+CR  T YLPW+C  ERH YEKCQY++FK R   M E +E
Sbjct:   12 QATREEMSAAKVPLAYRDSCAHLLIPLNRCRYETYYLPWKCEDERHTYEKCQYVEFKKRVAKMDELRE 79
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A6A6UGI8_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UGI8_9PEZI)

HSP 1 Score: 100 bits (249), Expect = 6.100e-26
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   13 HGME---GKATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKE 222
            HG E   G AT EEM AA++PLA+RDSCAHLL+PLNKCR+   YLPW+C HERH YE CQY +FK R   M E
Sbjct:   15 HGHEDPKGPATREEMTAARLPLAYRDSCAHLLIPLNKCRQKEWYLPWKCDHERHSYEGCQYAEFKKRVKKMDE 87
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A0G2ESH7_9EURO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2ESH7_9EURO)

HSP 1 Score: 100 bits (248), Expect = 6.710e-26
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   31 ATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKESKE 231
            AT EEM AAK+PLA+RDSCA+LL+PLNKCRR + YLPW+C +ERH YEKCQY +FK R   M E +E
Sbjct:   19 ATREEMSAAKLPLAYRDSCANLLIPLNKCRRESYYLPWKCENERHSYEKCQYEEFKQRVAKMDELRE 85
[Close]
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Match: A0A8H4LWB4_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Ophiocordycipitaceae TaxID=474942 RepID=A0A8H4LWB4_9HYPO)

HSP 1 Score: 99.8 bits (247), Expect = 8.050e-26
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   28 KATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKDRKVMMKE 222
            +AT EEM  A++PLA+RDSCAH+L+PLNKCRR+T Y PW+C+ ERH YEKCQYL+FK R   M E
Sbjct:   11 RATREEMRDARLPLAYRDSCAHILIPLNKCRRATWYAPWKCTDERHSYEKCQYLEFKKRVAKMDE 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI1.440e-4794.87NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4MZR7_9PEZI6.710e-2763.51NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9MJU7_HYPVG6.900e-2762.82NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
I1S5X9_GIBZE9.810e-2767.65NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4N0K7_9PEZI1.350e-2663.51NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0W7VSI5_9HYPO1.980e-2666.18NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A420YNW9_9PEZI2.030e-2666.18NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6UGI8_9PEZI6.100e-2664.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G2ESH7_9EURO6.710e-2667.16NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8H4LWB4_9HYPO8.050e-2666.15NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:167846..169010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ56
Preferred nameNDUFB7
PFAMsNDUF_B7
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons2
Evalue2.36e-48
EggNOG OGsKOG3468@1|root,KOG3468@2759|Eukaryota
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase, B18 subunit
Ec32 orthologEc-02_006350.1
EC2.3.1.48
DescriptionNADH dehydrogenase (quinone) activity
Cds size234
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789682.2766604-CDS-P-littoralis_Contig145:167845..1680361680789682.2766604-CDS-P-littoralis_Contig145:167845..168036Pylaiella littoralis U1_48CDSP-littoralis_Contig145 167846..168036 +
1680789682.2877665-CDS-P-littoralis_Contig145:168967..1690101680789682.2877665-CDS-P-littoralis_Contig145:168967..169010Pylaiella littoralis U1_48CDSP-littoralis_Contig145 168968..169010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.63.1prot_P-littoralis_Contig145.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 167846..169010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.63.1

>prot_P-littoralis_Contig145.63.1 ID=prot_P-littoralis_Contig145.63.1|Name=mRNA_P-littoralis_Contig145.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MGGDHGMEGKATEEEMVAAKMPLAFRDSCAHLLLPLNKCRRSTMYLPWQC
SHERHIYEKCQYLDFKDRKVMMKESKE*
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mRNA from alignment at P-littoralis_Contig145:167846..169010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.63.1 ID=mRNA_P-littoralis_Contig145.63.1|Name=mRNA_P-littoralis_Contig145.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1165bp|location=Sequence derived from alignment at P-littoralis_Contig145:167846..169010+ (Pylaiella littoralis U1_48)
ATGGGAGGCGACCACGGCATGGAGGGCAAGGCGACGGAAGAGGAAATGGT
GGCTGCTAAAATGCCCCTGGCGTTCCGGGATTCATGCGCCCACCTCCTGC
TCCCTCTCAACAAGTGCAGGAGGTCCACCATGTACTTGCCATGGCAGTGC
TCGCACGAACGCCACATCTACGAGAAGTGCCAGTACCTCGAGTGAGTACT
TTTTGTCTGTTTTTGTCGTTTTTTGAGTTGGTGGATGGGCATATTGTTGA
TAGCTTCCCCCCCGGGCTCGTCTGATTGTTTGGTTTGGTGTAATTATGCA
CATGTGTTTGATCGCGTGCAGAGATTGACCGACCAGTTTCAATCTGGGGA
TGTGGCCGGATTTGTCGTATCATTTCACGCTGCCAGCATCAAGGAAACCG
TTGTTGTAAGCTTACCACGTATTACACGGGCTATGGTAGTTAAAAACATA
CCCATCATCCAGTTTGGCTCCCAATAGTCGCGGTCAAGGATCAATTCGGG
TATCGGCTGTGGTCTCCCTCGAGAATCGCTTTGAGTCGTTGTAGTGGAAG
GTCTAAATACTTAACGCAATGTGACGCCGGTTGTTTTGTTGGGGGTGCTC
GGCTGATATAGATGGGACTTTTCAAGGTATTGCTCAGGTGTACGTTGCCA
TTCGTAGGGCGCCTGTTGCAACAGAGACTGGCGTCGTGCAGTCAGAATTT
GAGTTGCCGTATCAGTACGATGCGTGTCACCACGGTGCTTTACCTCTCCT
TGCATGCCGACAATCCGCGGTGAGGAGCAATTGCCTTCGTCTTATGTGAA
CAATCTGCGGTGTGGAGCAAGTGCCTTCGTCTCGTGTGAATTTCGTTGAT
GACTGCTCAAAGAGGCAAAACGCTGAAGGTGGGATACAGTTGCCAATAAT
ATGGCAGACGAGCAGTTCATTTCCTCAGGCACTGTGCCCATGGTGCGTTC
TGTCTCTATTTTATACTCGGAGTATCGTCCTAGACAAATCAGCACAGAAT
ATCAAACACGTTCGCCGTTTGTTCGTTCTCTGCTCGTTACAGAACTGTGA
CCTACGGCGGAAACTAACGAGATTTCCCCGCCCCGTTGCCCCGTGTGTTT
TCCGATTTTTTTTTGTACGTAGTTTTAAGGATAGGAAAGTGATGATGAAA
GAAAGCAAGGAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:167846..169010+

>mRNA_P-littoralis_Contig145.63.1 ID=mRNA_P-littoralis_Contig145.63.1|Name=mRNA_P-littoralis_Contig145.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig145:167846..169010+ (Pylaiella littoralis U1_48)
ATGGGAGGCGACCACGGCATGGAGGGCAAGGCGACGGAAGAGGAAATGGT
GGCTGCTAAAATGCCCCTGGCGTTCCGGGATTCATGCGCCCACCTCCTGC
TCCCTCTCAACAAGTGCAGGAGGTCCACCATGTACTTGCCATGGCAGTGC
TCGCACGAACGCCACATCTACGAGAAGTGCCAGTACCTCGATTTTAAGGA
TAGGAAAGTGATGATGAAAGAAAGCAAGGAATAA
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