mRNA_P-littoralis_Contig144.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.93.1
Unique NamemRNA_P-littoralis_Contig144.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.93.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.130e-14
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   19 DNVSYVLARTIRSNLHQEAAKLIGCAGMGNQRKRGQCFARAMQMFPRKRMDRIPTEVVLALLRH 210
            DNVSYVLART+R  L   AA+ IG +G GNQ +RG CFARAM MF  K M+ IP +VVLALLR+
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE8.130e-1464.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:260671..261361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size692
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.357729-CDS-P-littoralis_Contig144:260670..2608831680789678.357729-CDS-P-littoralis_Contig144:260670..260883Pylaiella littoralis U1_48CDSP-littoralis_Contig144 260671..260883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.3666048-UTR-P-littoralis_Contig144:260883..2613611680789678.3666048-UTR-P-littoralis_Contig144:260883..261361Pylaiella littoralis U1_48UTRP-littoralis_Contig144 260884..261361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.93.1prot_P-littoralis_Contig144.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 260671..260883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.93.1

>prot_P-littoralis_Contig144.93.1 ID=prot_P-littoralis_Contig144.93.1|Name=mRNA_P-littoralis_Contig144.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
GEGGKYDNVSYVLARTIRSNLHQEAAKLIGCAGMGNQRKRGQCFARAMQM
FPRKRMDRIPTEVVLALLRH*
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mRNA from alignment at P-littoralis_Contig144:260671..261361+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.93.1 ID=mRNA_P-littoralis_Contig144.93.1|Name=mRNA_P-littoralis_Contig144.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=691bp|location=Sequence derived from alignment at P-littoralis_Contig144:260671..261361+ (Pylaiella littoralis U1_48)
GGAGAGGGAGGAAAATACGACAACGTGTCGTATGTCCTTGCTCGCACGAT
CCGCAGCAATTTGCACCAGGAGGCGGCGAAATTAATCGGGTGTGCGGGCA
TGGGTAACCAGCGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATG
TTCCCTCGAAAAAGAATGGATCGAATACCCACTGAAGTGGTTCTAGCACT
GTTGAGGCACTGATGGTGGTTGCGAATTGCTGTCGGGGAAATAGCAACTG
CTGTATTTCGTAGCCCACGAGCGGACGGAGCGGCGAGAACTCGAAAACTG
TTGTAATCAGGGACAGCACCGGCACGCACAGGGTGCTGAACACGTTGCGG
ATCAGATAAGTCGTGGTCAAGTGGCGACTTCGCATGGTGCGTCTGTCTGT
TTGATTACTTATGAGAAGTGTACGGGCTTGTCTACGTTTGTTCGGCATTG
AAACACGAAGTTTGCTATGATACGATATTGGTGGCATGAAAATAGGAGAT
ACTTTCGAAGTAGCATATTAAACTAAATTGTACTCAGAAATATGGGACAG
TTGAATCCGGGATAAATGAGGGAGTTCCGTGGCGACTTATGGGGTCTCCA
TGTGTTGTTTTGGTGTAAAATGATGCTATTTGTCTCCAGGTTCAACAAGA
ATCTACCGTTATCGACGAAGCTCGGCGAAGCGATCACGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:260671..261361+

>mRNA_P-littoralis_Contig144.93.1 ID=mRNA_P-littoralis_Contig144.93.1|Name=mRNA_P-littoralis_Contig144.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig144:260671..261361+ (Pylaiella littoralis U1_48)
GGAGAGGGAGGAAAATACGACAACGTGTCGTATGTCCTTGCTCGCACGAT
CCGCAGCAATTTGCACCAGGAGGCGGCGAAATTAATCGGGTGTGCGGGCA
TGGGTAACCAGCGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATG
TTCCCTCGAAAAAGAATGGATCGAATACCCACTGAAGTGGTTCTAGCACT
GTTGAGGCACTGA
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