mRNA_P-littoralis_Contig144.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.69.1
Unique NamemRNA_P-littoralis_Contig144.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:208106..208729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size624
Hectar predicted targeting categorymitochondrion
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.3658385-UTR-P-littoralis_Contig144:208105..2081171680789677.3658385-UTR-P-littoralis_Contig144:208105..208117Pylaiella littoralis U1_48UTRP-littoralis_Contig144 208106..208117 -
1680789677.3871713-UTR-P-littoralis_Contig144:208435..2087291680789677.3871713-UTR-P-littoralis_Contig144:208435..208729Pylaiella littoralis U1_48UTRP-littoralis_Contig144 208436..208729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.3781664-CDS-P-littoralis_Contig144:208117..2084351680789677.3781664-CDS-P-littoralis_Contig144:208117..208435Pylaiella littoralis U1_48CDSP-littoralis_Contig144 208118..208435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.69.1prot_P-littoralis_Contig144.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 208118..208435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.69.1

>prot_P-littoralis_Contig144.69.1 ID=prot_P-littoralis_Contig144.69.1|Name=mRNA_P-littoralis_Contig144.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MYRPPCRFQSISSFVRRAWIAKYNCCVALTKRSKSQKICAPQQWNRGAGY
LAYLSSLRTTPDALKPWPFPTAKEPTSLGVNSAPSLIPIWARCHQMCGSD
VSVSK*
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mRNA from alignment at P-littoralis_Contig144:208106..208729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.69.1 ID=mRNA_P-littoralis_Contig144.69.1|Name=mRNA_P-littoralis_Contig144.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig144:208106..208729- (Pylaiella littoralis U1_48)
GCGAGGCCGAGACGCTGCTGGCAGAGGGTCCAGCAGTGGTAGCTCACCCC
AAAAGATAGCCACAGGTGTGGCTGTGCCACGACCGACAGCAGAAAGCCAT
GCTTCTCCCGGCTCCGTCCCTGAATTCTCGACAAGAGCAGCAGCTAGCTG
TGGTGACGGAGAGTTGATTTATTTTTCTTTTTTTCAGGGCCATGACTGAA
AAGTCTGCTTGGTACGTGATTACAAAATCTTTTTTCCTGTCATACCTGGC
GCCCCACAGCCCCAAACCTTGGCCAAGCCTGACAGGGGATAGGCATGTAT
CGCCCGCCCTGCAGGTTTCAGAGCATCTCGTCTTTTGTTCGGCGAGCATG
GATTGCCAAATATAACTGTTGTGTTGCTCTGACAAAGCGGTCGAAAAGTC
AAAAAATTTGCGCTCCACAGCAGTGGAACCGTGGTGCGGGGTACTTGGCA
TATCTTTCCTCGCTGCGTACGACACCCGACGCCCTCAAGCCTTGGCCATT
TCCGACGGCCAAGGAGCCCACCTCTCTAGGGGTGAACTCGGCACCGAGTC
TCATCCCTATTTGGGCGAGATGTCATCAGATGTGTGGAAGTGATGTCTCG
GTGAGCAAATGAAGCAAATGACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:208106..208729-

>mRNA_P-littoralis_Contig144.69.1 ID=mRNA_P-littoralis_Contig144.69.1|Name=mRNA_P-littoralis_Contig144.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig144:208106..208729- (Pylaiella littoralis U1_48)
ATGTATCGCCCGCCCTGCAGGTTTCAGAGCATCTCGTCTTTTGTTCGGCG
AGCATGGATTGCCAAATATAACTGTTGTGTTGCTCTGACAAAGCGGTCGA
AAAGTCAAAAAATTTGCGCTCCACAGCAGTGGAACCGTGGTGCGGGGTAC
TTGGCATATCTTTCCTCGCTGCGTACGACACCCGACGCCCTCAAGCCTTG
GCCATTTCCGACGGCCAAGGAGCCCACCTCTCTAGGGGTGAACTCGGCAC
CGAGTCTCATCCCTATTTGGGCGAGATGTCATCAGATGTGTGGAAGTGAT
GTCTCGGTGAGCAAATGA
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