mRNA_P-littoralis_Contig144.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.52.1
Unique NamemRNA_P-littoralis_Contig144.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:162477..163340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size777
Hectar predicted targeting categorymitochondrion
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.274386-UTR-P-littoralis_Contig144:162476..1627851680789677.274386-UTR-P-littoralis_Contig144:162476..162785Pylaiella littoralis U1_48UTRP-littoralis_Contig144 162477..162785 -
1680789677.2861223-UTR-P-littoralis_Contig144:162874..1629411680789677.2861223-UTR-P-littoralis_Contig144:162874..162941Pylaiella littoralis U1_48UTRP-littoralis_Contig144 162875..162941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.300602-CDS-P-littoralis_Contig144:162941..1633401680789677.300602-CDS-P-littoralis_Contig144:162941..163340Pylaiella littoralis U1_48CDSP-littoralis_Contig144 162942..163340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.52.1prot_P-littoralis_Contig144.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 162942..163340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.52.1

>prot_P-littoralis_Contig144.52.1 ID=prot_P-littoralis_Contig144.52.1|Name=mRNA_P-littoralis_Contig144.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
GRVLVFSRTRNNKKYIRKNKGRSGLGRGPRRCCRLFTAVLNAKKGLGLYV
HLFRWLRARARSEGLLSVGSGRQEVNIVLDWFAAVKASICFMFCNYLCLI
KRGTCFFETWGREAACAIRLPRVVDAKQMSER*
back to top

mRNA from alignment at P-littoralis_Contig144:162477..163340-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.52.1 ID=mRNA_P-littoralis_Contig144.52.1|Name=mRNA_P-littoralis_Contig144.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=864bp|location=Sequence derived from alignment at P-littoralis_Contig144:162477..163340- (Pylaiella littoralis U1_48)
GGTCGTGTTTTGGTTTTCAGTCGCACACGCAACAACAAAAAATATATACG
TAAAAACAAAGGAAGGTCAGGGCTGGGAAGAGGACCGCGGCGATGCTGTC
GTCTTTTCACTGCAGTCTTAAACGCGAAAAAAGGGCTCGGCTTGTACGTC
CATCTGTTTCGTTGGTTGCGAGCGAGGGCGAGGTCGGAGGGACTTCTGTC
TGTGGGGAGCGGCCGGCAAGAAGTGAATATTGTTTTGGATTGGTTTGCGG
CGGTTAAAGCAAGTATATGTTTCATGTTTTGTAATTATTTGTGTTTGATC
AAGAGGGGGACCTGTTTTTTCGAAACATGGGGTCGGGAAGCCGCGTGTGC
GATTCGTCTGCCGAGAGTTGTTGACGCAAAACAAATGTCTGAGCGATAGT
TGGGAGATGATCGTTTTGGGCGTTGGAGTTTGGAGGGTATGGGTCCACAG
ACTAAAATCACAAGCGCAATTTTTTTTCATATAGTACAGTGTTGGTTTGC
GGCGGTCAAAGTTGCAACAATTAATTTTATGTTTTTTACTTATTTGTGGC
TGATGAAGAGGGGGGACTGTTTTGTTTATACATGGGGTCGGGAAAACGCA
TGCGCAATTCGTCTGCCGAGAGTTTGACGAAAAACGTCTGCCGAGAGTTT
GACAAAAAACAACTGTCGGAGCGGTAGTGGGGAAGTGATCGTTTTGGGCG
TTGGAGTCTGGGAGGGTTTTGGTTCACAGGGTTAAAGTACACGCGCCTGT
TTTTTTTTAATAGCCGGTATGCACGCGCTTTTGGTCTGTCCATTTTTGTT
GCGCGATCATGCAATTAAAAAAAGGGGGTGTTGCGAAAATACTGGCTCGG
GCATGAGAGAGACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig144:162477..163340-

>mRNA_P-littoralis_Contig144.52.1 ID=mRNA_P-littoralis_Contig144.52.1|Name=mRNA_P-littoralis_Contig144.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig144:162477..163340- (Pylaiella littoralis U1_48)
GGTCGTGTTTTGGTTTTCAGTCGCACACGCAACAACAAAAAATATATACG
TAAAAACAAAGGAAGGTCAGGGCTGGGAAGAGGACCGCGGCGATGCTGTC
GTCTTTTCACTGCAGTCTTAAACGCGAAAAAAGGGCTCGGCTTGTACGTC
CATCTGTTTCGTTGGTTGCGAGCGAGGGCGAGGTCGGAGGGACTTCTGTC
TGTGGGGAGCGGCCGGCAAGAAGTGAATATTGTTTTGGATTGGTTTGCGG
CGGTTAAAGCAAGTATATGTTTCATGTTTTGTAATTATTTGTGTTTGATC
AAGAGGGGGACCTGTTTTTTCGAAACATGGGGTCGGGAAGCCGCGTGTGC
GATTCGTCTGCCGAGAGTTGTTGACGCAAAACAAATGTCTGAGCGATAG
back to top