mRNA_P-littoralis_Contig144.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.46.1
Unique NamemRNA_P-littoralis_Contig144.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:136400..137942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons3
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.0394838-CDS-P-littoralis_Contig144:136399..1368721680789677.0394838-CDS-P-littoralis_Contig144:136399..136872Pylaiella littoralis U1_48CDSP-littoralis_Contig144 136400..136872 -
1680789677.0525482-CDS-P-littoralis_Contig144:137454..1374821680789677.0525482-CDS-P-littoralis_Contig144:137454..137482Pylaiella littoralis U1_48CDSP-littoralis_Contig144 137455..137482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.0674443-UTR-P-littoralis_Contig144:137482..1375441680789677.0674443-UTR-P-littoralis_Contig144:137482..137544Pylaiella littoralis U1_48UTRP-littoralis_Contig144 137483..137544 -
1680789677.0758379-UTR-P-littoralis_Contig144:137728..1379421680789677.0758379-UTR-P-littoralis_Contig144:137728..137942Pylaiella littoralis U1_48UTRP-littoralis_Contig144 137729..137942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.46.1prot_P-littoralis_Contig144.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 136400..137482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.46.1

>prot_P-littoralis_Contig144.46.1 ID=prot_P-littoralis_Contig144.46.1|Name=mRNA_P-littoralis_Contig144.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
MANGTTGLSSGSTSLNSPAGTGATTAVHPGAGGGSSGATPYTEAGGDTAS
MERPTASGTSLLSAQTSTPVHPYTARVGAPAAGGGPSGNGAMSGAAGGEA
GQGGRGGRGGRGSRGGVASAPVATRATTLRYRGVGVPPGAVRRPTTAAAA
KAAKAASAKVRGAAAAE
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mRNA from alignment at P-littoralis_Contig144:136400..137942-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.46.1 ID=mRNA_P-littoralis_Contig144.46.1|Name=mRNA_P-littoralis_Contig144.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1543bp|location=Sequence derived from alignment at P-littoralis_Contig144:136400..137942- (Pylaiella littoralis U1_48)
GTGCTTGCGCCCGTCGAACTAGAACCAGACCAATGTGCTGCAGGGGTTCA
CTGCGTTATCGGACCCGACCCAAGCTACTACTTGCATCACTCCACTTCAT
GCTGCGAAAACCCGTGTCATCTGGCTTGCGTGGCACGGTGTGGGGAGTGT
GCAGATGTTTCATCGCCACCAGGAAGGAATTTGCCTCAAGAAGGCGAACA
GGCCGAACTGAGAGGTGAGTTGGGTCTTTTGCAGTGCTATCTTGTTTCGG
TGGTTCTCGCCCCTGTAGCCTCTCGTCGATACAGCAGTCGGATATGCTAT
CTGGCGAGTTTCAAACCCTTGCTTTGGAAGATCTGTACAAATATGAAATG
TGACGGAAAAAGAGACACAATCCTCTTCGTGATTACGGCAAACAACAGGC
CAGCGCAGGGCCATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGTCATC
GTGATCCAGGATGGCCAATGGAACGACAGGGCTTAGCAGTGAGTGTTTTG
CGGTCATGTTCGAGATTACTGCTGTTGTCATGTTGCACTTATATACCCAC
CGCTCTCTTTTCGTGTACAGCAGTATCACCCATGTTGGAGGACATGAGCC
CCACCTCGAAGCAAACCACAGCAACAACCATCCATATCGTCCGTTACACA
GGGCGAAGTCCGAGGCCGGTCGACAAGAAAAATGTCTATCATATGCTCCC
TGTAATTACCCGAAGGTGTAGTTTTATCGTGAACTTCGGGACCCAACAGG
TGCAGGACGTGACTGCGGTATAGGTCGTATACGATGCGAAAGTGCTCCGA
ACGTTCGGCGACGTGTTGATAAGTCGAAGCGTAACTCGAGGTGGCTGGAG
GTGGAGGGTTAGCATATTTTGGGGTACAGATATGACAACAGTTACATCCG
TAGTATACGCAGGGATGTCGCGAATTGCTGGGTACGTGTAGAGCACTGCC
TCGTCCTCCACTAACTGCCAAATCCGCTCCTACACAGACTCGTTAAGTTG
GGTTACTTAGTTTCCTTCTCATGATGATTTGTCTCCGATTTTCCACTCCC
GAATGCTGGCGTCGTCGAAGGTGGAAGTACGAGTCTCAATTCCCCTGCTG
GAACTGGGGCCACTACTGCTGTACACCCTGGTGCTGGTGGCGGCAGCAGC
GGGGCTACACCGTATACCGAAGCCGGTGGCGACACCGCGAGCATGGAGAG
GCCTACAGCGAGTGGTACTTCTTTGTTGTCAGCCCAGACTTCTACGCCTG
TTCATCCATACACAGCACGTGTCGGCGCTCCTGCAGCCGGCGGTGGTCCA
TCTGGGAATGGCGCCATGTCCGGGGCCGCTGGTGGTGAAGCTGGCCAGGG
TGGTCGTGGTGGTCGTGGCGGTCGTGGTAGTCGTGGTGGCGTTGCCTCGG
CACCAGTGGCCACGAGAGCTACGACTCTCCGATATCGAGGTGTAGGGGTA
CCGCCGGGTGCTGTCCGTCGCCCAACTACTGCTGCTGCTGCGAAGGCTGC
GAAGGCTGCTTCCGCGAAGGTTCGTGGGGCGGCGGCGGCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:136400..137942-

>mRNA_P-littoralis_Contig144.46.1 ID=mRNA_P-littoralis_Contig144.46.1|Name=mRNA_P-littoralis_Contig144.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig144:136400..137942- (Pylaiella littoralis U1_48)
ATGGCCAATGGAACGACAGGGCTTAGCAGTGGAAGTACGAGTCTCAATTC
CCCTGCTGGAACTGGGGCCACTACTGCTGTACACCCTGGTGCTGGTGGCG
GCAGCAGCGGGGCTACACCGTATACCGAAGCCGGTGGCGACACCGCGAGC
ATGGAGAGGCCTACAGCGAGTGGTACTTCTTTGTTGTCAGCCCAGACTTC
TACGCCTGTTCATCCATACACAGCACGTGTCGGCGCTCCTGCAGCCGGCG
GTGGTCCATCTGGGAATGGCGCCATGTCCGGGGCCGCTGGTGGTGAAGCT
GGCCAGGGTGGTCGTGGTGGTCGTGGCGGTCGTGGTAGTCGTGGTGGCGT
TGCCTCGGCACCAGTGGCCACGAGAGCTACGACTCTCCGATATCGAGGTG
TAGGGGTACCGCCGGGTGCTGTCCGTCGCCCAACTACTGCTGCTGCTGCG
AAGGCTGCGAAGGCTGCTTCCGCGAAGGTTCGTGGGGCGGCGGCGGCGGA
G
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