mRNA_P-littoralis_Contig101.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.17.1
Unique NamemRNA_P-littoralis_Contig101.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig101.17.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.120e-20
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   31 TFSVVFMTQSLGITLAAATASXXXXXIDGSGSLLVVCDKEEKHAATTP--TSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFRR-RQQRPVSS 327
            TFSVVFMTQSLGITLAA+         DG  SL VVCDKE+    +T   TS IRIGDRL++V GTS AG  V  VER+IVRG RPLE+VFRR R+  P +S
Sbjct:  584 TFSVVFMTQSLGITLAASD--------DGDKSL-VVCDKEDTTNPSTAEATSTIRIGDRLVSVGGTSTAGFGVNRVERLIVRGLRPLEVVFRRPRRHGPTAS 676
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLD2_9PHAE5.120e-2060.78Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:79176..79596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size421
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789349.6109111-CDS-P-littoralis_Contig101:79175..795951680789349.6109111-CDS-P-littoralis_Contig101:79175..79595Pylaiella littoralis U1_48CDSP-littoralis_Contig101 79176..79595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.17.1prot_P-littoralis_Contig101.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 79176..79595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.17.1

>prot_P-littoralis_Contig101.17.1 ID=prot_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
EEEEQEDEHTTFSVVFMTQSLGITLAAATASHDDDDIDGSGSLLVVCDKE
EKHAATTPTSQIRIGDRLIAVEGTSIAGLDVGSVERMIVRGSRPLEMVFR
RRQQRPVSSGGAGLPATAATNLVLSTYTAMCGAAEAAAGG
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mRNA from alignment at P-littoralis_Contig101:79176..79596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.17.1 ID=mRNA_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=421bp|location=Sequence derived from alignment at P-littoralis_Contig101:79176..79596+ (Pylaiella littoralis U1_48)
GAGGAGGAAGAACAAGAGGATGAACACACTACGTTTTCTGTCGTGTTTAT
GACACAATCGCTCGGGATCACCCTCGCCGCCGCCACCGCCTCCCACGACG
ACGACGACATCGATGGCTCTGGATCCCTCCTCGTGGTCTGCGACAAGGAA
GAAAAGCACGCGGCGACGACACCAACATCACAGATACGCATCGGTGACCG
TCTGATCGCGGTGGAAGGGACCAGCATCGCGGGATTAGACGTGGGCAGTG
TCGAGAGGATGATCGTCCGGGGGTCCCGCCCGCTGGAGATGGTCTTCCGA
CGGCGACAACAGCGCCCCGTTTCCAGCGGCGGCGCCGGTCTGCCTGCGAC
TGCCGCTACGAATTTGGTGTTATCTACGTATACAGCGATGTGTGGAGCAG
CAGAAGCAGCAGCAGGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:79176..79596+

>mRNA_P-littoralis_Contig101.17.1 ID=mRNA_P-littoralis_Contig101.17.1|Name=mRNA_P-littoralis_Contig101.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig101:79176..79596+ (Pylaiella littoralis U1_48)
GAGGAGGAAGAACAAGAGGATGAACACACTACGTTTTCTGTCGTGTTTAT
GACACAATCGCTCGGGATCACCCTCGCCGCCGCCACCGCCTCCCACGACG
ACGACGACATCGATGGCTCTGGATCCCTCCTCGTGGTCTGCGACAAGGAA
GAAAAGCACGCGGCGACGACACCAACATCACAGATACGCATCGGTGACCG
TCTGATCGCGGTGGAAGGGACCAGCATCGCGGGATTAGACGTGGGCAGTG
TCGAGAGGATGATCGTCCGGGGGTCCCGCCCGCTGGAGATGGTCTTCCGA
CGGCGACAACAGCGCCCCGTTTCCAGCGGCGGCGCCGGTCTGCCTGCGAC
TGCCGCTACGAATTTGGTGTTATCTACGTATACAGCGATGTGTGGAGCAG
CAGAAGCAGCAGCAGGAGGA
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