mRNA_P-littoralis_Contig1423.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1423.5.1
Unique NamemRNA_P-littoralis_Contig1423.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1423.5.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.440e-19
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 3 
Query: 1149 RQLHVAQVGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVLPRAAYRGRKCNVPEAWFTWY 1328
            R L V +VGV FKLRLSFLEPTKTRG+WLKDNPPS  +VLPRA Y GR C+  EAWF W+
Sbjct:  101 RALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
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BLAST of mRNA_P-littoralis_Contig1423.5.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.370e-15
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3 
Query: 1170 VGVVFKLRLSFLEPTKTRGQWLKDNPPSLTIVLPRAAYRGRKCNVPEAWFTWYT 1331
            +GV FKLRL+FL P K+RG+WLKDNPP   ++LPRA YR R+C+  E WF W T
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of mRNA_P-littoralis_Contig1423.5.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.020e-11
Identity = 54/162 (33.33%), Postives = 80/162 (49.38%), Query Frame = 2 
Query:  749 ICSRVDSVCGLF-----------SKFRKQRAAAAG----GSSSLMETGQRALLGPYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAACRLLTERGFRVQTNDINSRL-----PADTHLDASGADFVQAY--GQGDNRPDWVVTSPPYKNAFAILKQATACSS 1168
            +C+R D +  L+           +K R Q+ A  G    G     +  +R  L  Y + P+ V  ++  +++ G VLD CG   DA    L     +V TNDI++RL     P DT+LDAS A F   +   +   RPDWV+TSPPYK A   +K A + ++
Sbjct:   28 LCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAA 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1423.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE2.440e-1971.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE2.370e-1561.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.020e-1133.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1423contigP-littoralis_Contig1423:11747..14579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1601
Hectar predicted targeting categoryother localisation
Exons4
Cds size381
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1423.5.1prot_P-littoralis_Contig1423.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1423 12132..13413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.91327-UTR-P-littoralis_Contig1423:11746..121311680789669.91327-UTR-P-littoralis_Contig1423:11746..12131Pylaiella littoralis U1_48UTRP-littoralis_Contig1423 11747..12131 -
1680789669.9558249-UTR-P-littoralis_Contig1423:13413..138381680789669.9558249-UTR-P-littoralis_Contig1423:13413..13838Pylaiella littoralis U1_48UTRP-littoralis_Contig1423 13414..13838 -
1680789669.96508-UTR-P-littoralis_Contig1423:14169..145791680789669.96508-UTR-P-littoralis_Contig1423:14169..14579Pylaiella littoralis U1_48UTRP-littoralis_Contig1423 14170..14579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.9256825-CDS-P-littoralis_Contig1423:12131..123271680789669.9256825-CDS-P-littoralis_Contig1423:12131..12327Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 12132..12327 -
1680789669.934404-CDS-P-littoralis_Contig1423:12750..128811680789669.934404-CDS-P-littoralis_Contig1423:12750..12881Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 12751..12881 -
1680789669.9443183-CDS-P-littoralis_Contig1423:13359..134131680789669.9443183-CDS-P-littoralis_Contig1423:13359..13413Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 13360..13413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1423.5.1

>prot_P-littoralis_Contig1423.5.1 ID=prot_P-littoralis_Contig1423.5.1|Name=mRNA_P-littoralis_Contig1423.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
METGQRALLGPYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAACRLLTER
GFRVQTNDINSRLPADTHLDASGADFVQAYGQGDNRPDWVVTSPPYKNAF
AILKQATACSSSRRCFQAQVVVPRAY*
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mRNA from alignment at P-littoralis_Contig1423:11747..14579-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1423.5.1 ID=mRNA_P-littoralis_Contig1423.5.1|Name=mRNA_P-littoralis_Contig1423.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2833bp|location=Sequence derived from alignment at P-littoralis_Contig1423:11747..14579- (Pylaiella littoralis U1_48)
TAGGCTAAGGCAAAGTGTAGGACGGTTCCAGCTGCTGTGACTGCTGTAGG
CAGTGTTATTCGGCAGCTTTTTTTTTTTTTTTTTCAACCCTTTCGAGGCT
TGTGATCCCAATGAGTATCTTACTCTTGATCTGAGACCTTACAACGACCC
AGCACACTGTATCTCGTGGGTGAGGGGTCGAAGTGCTGTCCAAATCGATT
AAGGCAGGGTTGTGAACGAAAAAGATGGAAACGGGGTCACTGCTGAAATG
GTATGGAAGGCTTTATTCCGGTTCGGGAACAGGGGACGTGGGCAGCCCGA
TACCGCGGAGCCCCTTGCGCAAACCTGGCCAACTGACTGCCTCGCTTGTG
CTCTGTTCTACCGGCACGAACACTGCATTGGACGCCCAGCTACGACTGCC
ACGGCATAAGGTGTGTACGCAAGGCGTGCAACAGCAGCTTTCACACCAAT
CGCGCCATGGGCGAGTCCAGTAGGCGAAGGCAAAGTGTAAGACGGTTCCA
GCTGCTGTGACTGCTGTAGGATACATATTGTCTTCGAATGCTCCGCACTC
AAAGGCAGCTCTAGTCTTGAACCGTACGAGTTTGGGTTTGAACAAGCCAT
CGTTCGTCAGCTGACAACACGGCCAGCAGTTGGGTTGGGTGTGGGGTGAG
GATGAGTGTCTCCTAACGCCCGTAACAACACTCTGAAGTACTCGCTCCCG
CTCTCTCTTTCGCTGTATTTCGCCGCATGTTCCTCATCCAGGGAGGAACT
CCGCCTTGCTCCCACTCACGTTTTGCTTGTCCTGGTTTCTGTTCAACAAC
TGCTGCTCAGCACAACGCACGTCCACGGCCATGAGCGTGAGAGGGAGGCG
AGGTGCGTGTGGAAGGTCCGATCACGGCCTCCCCAGCGAAGCCGAGACTG
CAAACTTGTGCTGCGCCTGTAGGCGCCCTGGCCCCAGCGACAACTCAACT
AGGCGAGCATAGCAACACATTGGAGCCGGAGTGTATTGGGACTCTCTTGT
AGAATGGGAAGCTGCGGCGGCCGGCACGTGGCCCCACCGGCGAGACTTGC
TGCAAGAGCCTCTTGAGGCGAATGAGTGCATATGCTCGCGGGTTGATAGT
GTTTGTGGGCTGTTCTCCAAGTTTCGGAAGCAACGTGCTGCAGCGGCCGG
GGGAAGCTCGTCGTTGATGGAGACCGGACAAAGAGCCCTTCTTGGGCCGT
ATCCGTCGCTTCCTCAGCAGGTGATCATTATCCTGTGTGCATGTGACTGC
TGTGAGAAAAAGTTTGACAGTGCAGACTGCTGTAAACTGCTGTAGACTGC
GGTAGGGGAAGGGTGGCGATGTAGGCTGCTGCATACGGAGTATTACTGTA
GGGGAGTGGGTGACCAAGAATGTTGCTGCCGGCTGATGTAGAAAATCGGG
TGACCAGAATGACTGCTGTACGACAGCGGAGAGCTGTATCTCGATCTTTA
TTTTCAGACGGTCGGCACCTGAAGTGGTCGGGTTAGCCCTTCTACAATAA
ATTCGCCGGAAAAAAAAGCAGCCAAGTGTGTGTACACTCATCTTTTTTTT
TTTTTGCACTCGTCTTTATTTAATCGTGGACAACGCGAGAGCACAAGCAA
GCCGATGGGGCTGCTCGGCGGTGTATGGATCGTTCTGTTGATGTATATCA
ACAATTTCGAAATGATGCTGAAACGAATATCGGCATGCCTTGGGACAGGT
GAACGACATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGATTGCT
GCGGGAGCACGAGAGATGCAGCGTGTCGGCTGCTGACAGAAAGAGGCTTT
CGTGTTCAGACGAACGACATCAACAGCAGGCAAGCGAGACAGACAATTGC
ATGTACATGTACTAAATACGTTCAACGGCAGTGCAAACCAATTATCCAGT
GCCGCTCTCTCGTCCACGTGCTACACGTAATGGTGTGATGTATCGCAAGG
GTGGGATGATAAAAATAAGCGAAATAAATATTTTGTCTCCTGAAGAATAA
CACTGCTTTTCCTCAACGTTGGCGATTCTTGATTTTCGTTAGGCGACCCA
AAATGCCCTGATGTTTGAGCCGACAAATCTCGGAAGAAAGCTTTTCAGGT
CATCGCCTGCGGAGGCTAAGCCTTTCTGAAAGGGGTGGTGATCATGGTTT
ACACGATACCAAATTCGCCACAGGCTCACAAATATTCGCATACACGATCC
ACGTTCGTTCTGTCGCCTACGCGTGCATGCCTGTTTTGTTCCCGCACGAC
AGACTGCCAGCGGACACACACCTCGATGCCTCGGGCGCAGACTTTGTGCA
GGCGTACGGGCAGGGAGATAATCGCCCCGACTGGGTCGTCACGAGCCCTC
CATACAAAAATGCCTTCGCTATCCTGAAGCAGGCAACTGCATGTAGCTCA
AGTCGGCGTTGTTTTCAAGCTCAGGTTGTCGTTCCTCGAGCCTACTAAAA
CTCGCGGACAGTGGTTGAAAGACAACCCACCTTCTCTCACGATAGTTCTG
CCCCGCGCAGCTTACCGGGGTAGGAAATGTAATGTCCCGGAGGCATGGTT
CACGTGGTACACTGGTGAAAAGGCTCATTGTCCTATTGCACAGCAGGTGG
TGTTTGCCGTCTGAGCCTCTCTCACGTTGAATCTGTTACGCCAGGTACCG
ACGAACGCGTGTGACGAACGACCTTTCTCTGGTCGGATTGTACTCGCGCC
GTACAGAGGGAGCCTTCCCCTGGTTTAATCTCCCCAACCGTATGTATGGG
TACCCCCGAATGCCAGGGAGGCCGCAGGGGATACTGGCACCCTATTGGAA
GGGCGATAACTTGAGGACTCTTGGAGTCGCAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1423:11747..14579-

>mRNA_P-littoralis_Contig1423.5.1 ID=mRNA_P-littoralis_Contig1423.5.1|Name=mRNA_P-littoralis_Contig1423.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1423:11747..14579- (Pylaiella littoralis U1_48)
ATGGAGACCGGACAAAGAGCCCTTCTTGGGCCGTATCCGTCGCTTCCTCA
GCAGGTGAACGACATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTG
ATTGCTGCGGGAGCACGAGAGATGCAGCGTGTCGGCTGCTGACAGAAAGA
GGCTTTCGTGTTCAGACGAACGACATCAACAGCAGACTGCCAGCGGACAC
ACACCTCGATGCCTCGGGCGCAGACTTTGTGCAGGCGTACGGGCAGGGAG
ATAATCGCCCCGACTGGGTCGTCACGAGCCCTCCATACAAAAATGCCTTC
GCTATCCTGAAGCAGGCAACTGCATGTAGCTCAAGTCGGCGTTGTTTTCA
AGCTCAGGTTGTCGTTCCTCGAGCCTACTAA
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