mRNA_P-littoralis_Contig1423.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1423.4.1
Unique NamemRNA_P-littoralis_Contig1423.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1423.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1423contigP-littoralis_Contig1423:8574..8995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.839927-CDS-P-littoralis_Contig1423:8573..87051680789669.839927-CDS-P-littoralis_Contig1423:8573..8705Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 8574..8705 +
1680789669.8520515-CDS-P-littoralis_Contig1423:8772..89491680789669.8520515-CDS-P-littoralis_Contig1423:8772..8949Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 8773..8949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.8651986-UTR-P-littoralis_Contig1423:8949..89951680789669.8651986-UTR-P-littoralis_Contig1423:8949..8995Pylaiella littoralis U1_48UTRP-littoralis_Contig1423 8950..8995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1423.4.1prot_P-littoralis_Contig1423.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1423 8574..8949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1423.4.1

>prot_P-littoralis_Contig1423.4.1 ID=prot_P-littoralis_Contig1423.4.1|Name=mRNA_P-littoralis_Contig1423.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
LRAPERCLELWREVFKSGPTRLKIRTFTPQNLTSSSSKRQRAKNFWRTLT
WTEEQREEVTRLIGAVLPLALAHHEGGARKGSESAGPWQFITTNCPDAVQ
PS*
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mRNA from alignment at P-littoralis_Contig1423:8574..8995+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1423.4.1 ID=mRNA_P-littoralis_Contig1423.4.1|Name=mRNA_P-littoralis_Contig1423.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=422bp|location=Sequence derived from alignment at P-littoralis_Contig1423:8574..8995+ (Pylaiella littoralis U1_48)
CTCAGAGCGCCGGAGAGGTGCCTGGAGCTTTGGAGGGAGGTATTCAAGTC
CGGGCCGACGAGACTCAAAATTCGCACCTTCACGCCACAAAACTTGACGT
CGTCATCCTCGAAAAGACAACGGGCCAAGAATGCAGCGCAGAAGGAATGG
AAGGATGTAGGGGCCTTGGCCGAGCAGTACCACCAAATCGTGATGACAGT
TCTGGAGAACTTTGACGTGGACAGAAGAGCAGCGCGAAGAGGTGACACGG
CTGATTGGAGCTGTTCTGCCGTTGGCCTTAGCCCACCACGAAGGTGGGGC
ACGAAAGGGGTCTGAGTCGGCAGGCCCTTGGCAGTTTATCACGACGAATT
GCCCGGATGCTGTTCAACCAAGCTAGTTCTACGACACCGAAGGGCACGCC
ATCGACTTGGCGACAGAGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1423:8574..8995+

>mRNA_P-littoralis_Contig1423.4.1 ID=mRNA_P-littoralis_Contig1423.4.1|Name=mRNA_P-littoralis_Contig1423.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1423:8574..8995+ (Pylaiella littoralis U1_48)
CTCAGAGCGCCGGAGAGGTGCCTGGAGCTTTGGAGGGAGGTATTCAAGTC
CGGGCCGACGAGACTCAAAATTCGCACCTTCACGCCACAAAACTTGACGT
CGTCATCCTCGAAAAGACAACGGGCCAAGAATTTCTGGAGAACTTTGACG
TGGACAGAAGAGCAGCGCGAAGAGGTGACACGGCTGATTGGAGCTGTTCT
GCCGTTGGCCTTAGCCCACCACGAAGGTGGGGCACGAAAGGGGTCTGAGT
CGGCAGGCCCTTGGCAGTTTATCACGACGAATTGCCCGGATGCTGTTCAA
CCAAGCTAG
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