mRNA_P-littoralis_Contig1421.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1421.10.1
Unique NamemRNA_P-littoralis_Contig1421.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.250e-24
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            +  G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  R   LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:   65 VSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSILRQKLEAYGWVQSDHDANAHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 225
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.460e-23
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            I  G  +   + L+V  G  AV++A +AW +I+ K+ VP++V  +   G P+E+W+  + ++     T K  L+ +W +L+ Q GE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:  110 ISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLFRVHAETDKLELQGQWYSLKQQSGEEPRRYLTRASVLRQKLEAYGWAQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 270
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.430e-23
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:   10 GDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELE 468
            G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E
Sbjct:  368 GKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRILLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETE 520
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5JCR6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.370e-23
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            I  G+ +   + L V  G  AV++A +AW +I+ K+ VP++V  +   GSP+E+W+  +        + K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:  110 ISAGNTDANISALKVEHGTEAVDRAFKAWQLIISKIQVPTIVPAILDSGSPTESWDQFLNFCRVHAESDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 270
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.020e-22
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y       K  L+ +   L+ QVGE P  Y  RA   R K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +     E E  R R
Sbjct:  401 IRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDANVHYVRNLMPDFNVQRSVLLAHSEVKTELVEKVILTTWAETEAARKR 561
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.480e-21
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E+W+  +  Y     T K  L+ +  +L+ QVGE P  Y  RA  LR   E +G   SD ++N H  R L  D+ +Q+S+LL   EI+T+ +E+ +  +  E E  R R
Sbjct:   97 IRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDANFHYVRNLLPDFNVQRSVLLAHSEITTKLVEKVIMTSWAETEAARKR 257
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BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.590e-17
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 483
            I+VG  +     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E+W +    +     T + +L+ EW  L   V   P  Y +R   LR +    GV +++ ++NRH+ R L  +Y +    L+    +  E +ER +  A  E+E  R +
Sbjct:  160 IRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERIIVNAWAEMEARRKK 320
[Close]
BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.840e-16
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:    1 IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRH 351
            I  G  +L  + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H
Sbjct:  110 ISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWGQSDHDANVH 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1421.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JKK7_9PHAE1.250e-2435.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH8_9PHAE2.460e-2334.78Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KB85_9PHAE4.430e-2336.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCR6_9PHAE6.370e-2335.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LNE2_9PHAE5.020e-2234.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE6.480e-2134.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE6.590e-1729.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQQ7_9PHAE3.840e-1637.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1421contigP-littoralis_Contig1421:14356..14838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size484
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.5850053-CDS-P-littoralis_Contig1421:14355..148381680789669.5850053-CDS-P-littoralis_Contig1421:14355..14838Pylaiella littoralis U1_48CDSP-littoralis_Contig1421 14356..14838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1421.10.1prot_P-littoralis_Contig1421.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1421 14356..14838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1421.10.1

>prot_P-littoralis_Contig1421.10.1 ID=prot_P-littoralis_Contig1421.10.1|Name=mRNA_P-littoralis_Contig1421.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
IKVGDKNLRSADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGS
PSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRT
KREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKK
AHGELELERSR
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mRNA from alignment at P-littoralis_Contig1421:14356..14838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1421.10.1 ID=mRNA_P-littoralis_Contig1421.10.1|Name=mRNA_P-littoralis_Contig1421.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig1421:14356..14838+ (Pylaiella littoralis U1_48)
ATCAAGGTGGGCGACAAAAATTTAAGATCAGCAGACCTGCACGTGATTTT
TGGTGTACCAGCAGTAGAGAAGGCGCAGAGAGCGTGGAGTATTATACTGG
AAAAGGTCACTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGT
CCGAGTGAAGCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCAC
CACAGCCAAAGAAACACTAGAGCAGGAGTGGATTAATCTGGAGATGCAAG
TAGGAGAGACCCCCACTTTGTATTTTGCTCGCGCCAAAACGCTGCGCACA
AAGCGTGAAAAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACA
TATTGCCCGCCGTCTTTCGTCCGACTACGCACTGCAAAAGAGTATGCTTC
TGATAAGTGATGAGATTTCTACAGAGACCCTCGAACGCACAGTGAAGAAG
GCGCACGGGGAGTTGGAATTGGAACGGTCGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1421:14356..14838+

>mRNA_P-littoralis_Contig1421.10.1 ID=mRNA_P-littoralis_Contig1421.10.1|Name=mRNA_P-littoralis_Contig1421.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig1421:14356..14838+ (Pylaiella littoralis U1_48)
ATCAAGGTGGGCGACAAAAATTTAAGATCAGCAGACCTGCACGTGATTTT
TGGTGTACCAGCAGTAGAGAAGGCGCAGAGAGCGTGGAGTATTATACTGG
AAAAGGTCACTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGT
CCGAGTGAAGCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCAC
CACAGCCAAAGAAACACTAGAGCAGGAGTGGATTAATCTGGAGATGCAAG
TAGGAGAGACCCCCACTTTGTATTTTGCTCGCGCCAAAACGCTGCGCACA
AAGCGTGAAAAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACA
TATTGCCCGCCGTCTTTCGTCCGACTACGCACTGCAAAAGAGTATGCTTC
TGATAAGTGATGAGATTTCTACAGAGACCCTCGAACGCACAGTGAAGAAG
GCGCACGGGGAGTTGGAATTGGAACGGTCGAGG
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