mRNA_P-littoralis_Contig142.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.94.1
Unique NamemRNA_P-littoralis_Contig142.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.94.1 vs. uniprot
Match: D8LTX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.140e-36
Identity = 95/153 (62.09%), Postives = 106/153 (69.28%), Query Frame = 2 
Query:  227 MSSKIAKRMMSRVEDMVSRASSATKGADLPTSKRKAAKRALLQAPLKRKRS-SNAGATKSGRSVSKNTARNKTGRKPAGLLEQARRELRGKSRVARNVSLLSYNSGXXXXXXXXXXXXXXXXXXXXXXXXXVSKSRKAVEHLLQRDTKKRGGR 682
            MSSKIAKRMMSRV++MVSRASSATK  DL TSK+KAAKRALLQAP KRK S S + AT S RSV+K +ARNK GR+  GLL++ARRELRGKS VARNVSLLSY+S                           SKSRKAVEHLL  D +K  GR
Sbjct:    1 MSSKIAKRMMSRVDEMVSRASSATKRTDLSTSKKKAAKRALLQAPSKRKGSGSTSVATSSSRSVTKKSARNKAGRRTMGLLDKARRELRGKSLVARNVSLLSYSS----RGEGRAAGAGADSGAAKVGGGVASKSRKAVEHLLLLDARKAAGR 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTX1_ECTSI2.140e-3662.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:259684..264131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1148
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.2390985-UTR-P-littoralis_Contig142:259683..2601371680789667.2390985-UTR-P-littoralis_Contig142:259683..260137Pylaiella littoralis U1_48UTRP-littoralis_Contig142 259684..260137 -
1680789667.2916164-UTR-P-littoralis_Contig142:263905..2641311680789667.2916164-UTR-P-littoralis_Contig142:263905..264131Pylaiella littoralis U1_48UTRP-littoralis_Contig142 263906..264131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.2561526-CDS-P-littoralis_Contig142:260137..2604231680789667.2561526-CDS-P-littoralis_Contig142:260137..260423Pylaiella littoralis U1_48CDSP-littoralis_Contig142 260138..260423 -
1680789667.2674887-CDS-P-littoralis_Contig142:260691..2607951680789667.2674887-CDS-P-littoralis_Contig142:260691..260795Pylaiella littoralis U1_48CDSP-littoralis_Contig142 260692..260795 -
1680789667.2797914-CDS-P-littoralis_Contig142:263827..2639051680789667.2797914-CDS-P-littoralis_Contig142:263827..263905Pylaiella littoralis U1_48CDSP-littoralis_Contig142 263828..263905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.94.1prot_P-littoralis_Contig142.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 260138..263905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.94.1

>prot_P-littoralis_Contig142.94.1 ID=prot_P-littoralis_Contig142.94.1|Name=mRNA_P-littoralis_Contig142.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MSSKIAKRMMSRVEDMVSRASSATKGADLPTSKRKAAKRALLQAPLKRKR
SSNAGATKSGRSVSKNTARNKTGRKPAGLLEQARRELRGKSRVARNVSLL
SYNSGGGGQATGAGGVSGGVAKAGGGGGGVVSKSRKAVEHLLQRDTKKRG
GRIAS*
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mRNA from alignment at P-littoralis_Contig142:259684..264131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.94.1 ID=mRNA_P-littoralis_Contig142.94.1|Name=mRNA_P-littoralis_Contig142.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4448bp|location=Sequence derived from alignment at P-littoralis_Contig142:259684..264131- (Pylaiella littoralis U1_48)
ACGGAGCCCCCGGAGCAATTTGATTTGCACCGCACAGCGCACAGCACGGC
AGGAGCACAACAGCAGTACAGCAGTAAGCAGTGGCAGTGTACCACACAGC
TGCTTTGCCGTCTTGTGTGGACGATTTTCCAGGCTACCGCAGAGCGAGGA
GAGAACCATTGACTCTTTGTATCTGTTTCGATTCTACTGTGGGGATCGAT
CGCACCACTCTACAGAGACTTACCCCATGTCTTCCAAGATAGCGAAACGG
ATGATGTCGAGAGTGGAAGACATGGTTTCGAGAGCATCGTCCGCGACGAA
AGGGGTGAGAGGAAGATGCCGTTCAAAGCGCTGCCTACGTGTCGCAGAGA
ACTGCAGTTACAGACTCCTGTACTCGGTAGCTCACTTGGTTACTCCCAAC
TTAGTGCTGCAACTGCAAGCAACGCGGTAGGTGGGTATGTGGGTACTATT
CATACTCGTATACTTGTACACCTGAAACACCCAGAGACCCGCTCCACCGC
TCACCACTCACCCGCTCCACTGCTGCTGCAGTTCAGCAGCAGCACCCACG
GCCCTTTTCCCCAAAGAAAAATAAGCAGGGTTCATGCTGTTGAAGGTGTA
GAGTAAGAGTAATATACGAGGGACACACCTTTCAACCTGACTATCATATC
ATATGTGGGGTGAGTGCAGCAGTATACACTGCTGTTTCTTTGGATCTGGA
TATCCCACACCGTACATATTTACGTATGCTGTCCATGGCGGGCGTTATCA
AAAGCGAATACTGTATCGGGGTTGGTACTCAAAAGACACGAGACACCCTT
TCTCTACCGCAGTTCCTCACGAGCCACAGCAGTTACGGTAGCTTGCGGCT
GGCTGCGGTAAATGTCAGAAGACGAGGTGTCACCTATCTTGGGCGCTGTT
GTACGAACGGAGGGAAATAGCATGCAGAAGCAGCACGCAGAGGTAGCATG
CAGTGGGATGTGGACATTGAGCCTGGTGTGCTCGGTACACGGGCTGCTGC
GTGTAACAGCGTGAGATCGTGAGATCAATACGCCGCAAGTACAGGAGTAG
TATCGTACAACATAAAATAAATCGGATTGAAGCACTTCTCCTCAAATCCC
CGCGAAAACAAAAGCCGCGAGCCTTGTGAATCAAGTACAGCAACTATTTC
GGCGGTTGGTAGTGGTGTACCAGGTATGTCACAAGAAACGTAGCATCTCC
GTGGGCACTGCTTCTGCACAAGTGGCGAGAAGTCGCACGCAGTACAGTAC
GAATCGCTGTGTGGCGTGTACGTACACTGAACGTCGTACACAGGCATATG
TAAACTGCTGTATGACAGCGTGAGATCAGGACGCTTAACAATTAAGAACT
TCGCACGATGCTGCGGATGTGGTGATGAGAAGGCATGGTGTTTATTTTAT
CTTTTCTCTCGAATTGCCTTTATTATTATTTGTTTCCTGCCCGAGGACAA
GAGAGTGAGAAACTACCCTGGCAGAGATGCACTAGCGTCCGCCATTCTTT
GGACCTATTTTACTGTGTCTCGGGATTGGTCTCTCTCTCTCCTAACATGA
CAACCGAGGTTTTCTTTCCTCCGGTGTAGGGAACAAATACCTTCTATTGT
ACGCAACATTCTCAGGTGAACCGAGTGCCCAAATGGTACTCTTACCATTT
ACTGCGCCAACTATGATGCAAATTCCCTCCCCCCACCTTCGAAAGAAAGG
GGTGGGCGGGCGGGAAAAGATGAAGATGCACAGGCTCGCTGGCTCGGCCC
CTATCTAAGCTGACTCCACTCAAGCTTCCTCTCTGTCCACCTTTTGTGCT
ATCTATCTCAACGCTCTCTAGCGGGGAAGACCTATGCCGTGAACCTCTTC
CGACGAAGTGACAAGAGAGGGCTGCCAATGGCTCACGATTACCATCTATC
CCCGGGCTCCCCTGATAATGATGCCTCCGAGCAATTCTCCAGTATCCAAA
TAAACAACGGTTTAGTTTTGTCTATGACAACGAAACCTTCCCTTAGTTGG
GAAATGAGCAGCGCAGTAGTGTTATACGTGATATGAGAATTATAGCATTG
TAGACCACGACCGGCAGCAGACCGCGATGTTGCAACCTGTGCAACTCGGT
ACACGAGCAAGTATGTAGGGCGTGTGTCCAGCAGCAGAGTCAGCAGGAGG
AAGAAGGCCAGTGAACAGGAAGAGTTGAGAATGGCAAGAGGGTAGAGGGG
TAAGAGGGTGTGAGCGCGGAAGATTTTGTCGAGTTTGTGCGGGGACCGCT
GCTTGCTGCTGCTGCTGCTGCGTGTGGTGCCGTTGGGCTACGGAATTTAC
CTCTGTGTGGTTGGTCGTCGATTCATACTTCGAAGCAGCCAACATTGCGC
ATTACTTTCATCCGTGTGCTGCTGCCACTGATACACGCGTTGCTTGTTTC
TTACGATACGCTTACTGCCACCTTTTACGGCGGTCTTTATGCCCCTCCAG
CACTCCGGCTGTAACACTTCCTTTTGATCTTGGATTCGGTTCTCTGACCG
GAGCGGCGTACAGCAGTAGCCGCCGTAGTAGCCGCCGCAAGCCTTGTATA
TTATTCTGGGCGTCTCTGGAGAAGCCTCCATCGCAGCAGTAGTACAGGTC
CTGCGGTTCTGTACGACTTGCGAAATACGGTGCTCCATCCAGCGCAGGTA
CAATATGACGCAGCAGGCGGGTTCTTTTTCCCTGTACAAGTGCGCTTCGG
CGCTGAGAGCATTGATCAGACTGTGCGCCCTCAAAAACCTCATGTTTTGT
ACGAGTATCTTGATCCAGCCGATGGTGGCGACATTCGGGCGACCATCACA
GCTTCTGTTCTGGATCGACCTACTTGGCGCAAGATATGTGGGGCTTTTTT
CTATACAAAGTACTGCTGAAGTGCTGTACAGTAGTACTCTCTGTTTCCAT
GTCGTTTGACTTCGAAAGTCTGCGGCACTATGTTTTGCGGTGCTGTACTG
AATCGTCCGGTGATATGCTATTCTACTACTGCAGTCGTCGAACCCTTCCC
CGAAGGGTTTCCAGGATGTTATGTTGCGGTACTGGTTCCCCCTTTCGCCT
ATGAAGCCATAATACCTCTCGCAGCAGCAAACAAGCATGTATGATATTTT
TACGGCCTCGTGAACGTGTTTGGTAGGACTTATACAGACAGCGACAACTG
TAATACTTCGTATACACCATCAGTGCCATCCATGTATGGCCAATCACTCA
CATCAGGTTCAGCACAGTAGGGTTGCGAAATAATCTGGTTCGGTCACCCC
CGCCACTGCCGCCGCCACCGCCACCACTCTCCCGACCTAAAACCTGTTTT
CCATATCGCCGAATCACATGGGTCAACAACACGAAGGCGGACCTTCCCAC
GAGCAAGCGAAAGGCGGCCAAACGAGCGCTTCTGCAGGCGCCGTTGAAGC
GAAAAAGAAGCAGCAATGCGGGAGCGACGAAGTCCGGCAGGTGGGCGCTG
CGTGTGGCGATGTTTTTCTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
AGACATGGGGAGTTGGGCGGCACAGTTATTTTATTTAGCGATACAGCTGT
ATGAAAAAAAAAACCTTCGTGTTGTGAAACACAGGTGATGGCCTCGCCCG
AACACACGCCCTCAATGCTGACTATTGCATTGTTTCCTGCTAGCTTTGTA
CCATGTATGTGCACATCTTTATCAAACTCTTAAAAACATTTGTTTTCCCT
CTCGTCAGGAGCGTTTCGAAGAACACCGCGAGAAATAAAACAGGGCGAAA
GCCTGCGGGCCTCCTGGAACAGGCTCGGCGGGAGCTACGCGGGAAGTCGC
GGGTGGCGCGGAACGTTAGCCTGCTGTCGTACAACTCGGGAGGAGGCGGG
CAGGCCACGGGGGCGGGGGGAGTGAGCGGCGGCGTCGCGAAGGCCGGCGG
TGGCGGTGGTGGTGTCGTCAGCAAATCGCGAAAAGCTGTTGAGCATCTTT
TGCAGCGGGACACAAAGAAGCGCGGGGGAAGAATAGCGAGCTGATGCTGT
ATCGTAGATTGCGTGTACATACACCACAATAGTTTTGACGCGAGTGTGTG
GTGCACATGTACGACACCAGCTTTATCCCACGGGACAAATGTCGTTTGGT
TGGGAGAGGAATCGTGCAGGTTATGGTCACGCGGCGGTCAACAACAATAC
ACAGAGAGAGAAGGCAGGAAAACACGACGCCCATTGTTTTGCTTAGCTTT
GGTCTCTAATGCGCAACGATGACGGTGATGATTGCGATCAGTATGTGTGA
TGCTCTGTAAGGAGAACGAGTTTCCTCCACAGGTTCTACGCCGCAGAAAC
GTCGTAATGCAGCGAACAAATGTCTTTTTTCACACGTCGCATCGCACACC
GGGTACTCCGAACTCCGAACACCTACTGGGGACGAGGTCGTCAAACAAGA
CGTTGTGAAGAACACAATGTTCTTGACCTCTCGGTGAAATGAAGGCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:259684..264131-

>mRNA_P-littoralis_Contig142.94.1 ID=mRNA_P-littoralis_Contig142.94.1|Name=mRNA_P-littoralis_Contig142.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig142:259684..264131- (Pylaiella littoralis U1_48)
ATGTCTTCCAAGATAGCGAAACGGATGATGTCGAGAGTGGAAGACATGGT
TTCGAGAGCATCGTCCGCGACGAAAGGGGCGGACCTTCCCACGAGCAAGC
GAAAGGCGGCCAAACGAGCGCTTCTGCAGGCGCCGTTGAAGCGAAAAAGA
AGCAGCAATGCGGGAGCGACGAAGTCCGGCAGGAGCGTTTCGAAGAACAC
CGCGAGAAATAAAACAGGGCGAAAGCCTGCGGGCCTCCTGGAACAGGCTC
GGCGGGAGCTACGCGGGAAGTCGCGGGTGGCGCGGAACGTTAGCCTGCTG
TCGTACAACTCGGGAGGAGGCGGGCAGGCCACGGGGGCGGGGGGAGTGAG
CGGCGGCGTCGCGAAGGCCGGCGGTGGCGGTGGTGGTGTCGTCAGCAAAT
CGCGAAAAGCTGTTGAGCATCTTTTGCAGCGGGACACAAAGAAGCGCGGG
GGAAGAATAGCGAGCTGA
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