mRNA_P-littoralis_Contig142.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.91.1
Unique NamemRNA_P-littoralis_Contig142.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.91.1 vs. uniprot
Match: D8LTX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX0_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 7.470e-58
Identity = 142/271 (52.40%), Postives = 151/271 (55.72%), Query Frame = 3 
Query:    3 TLDRDGTGATTAAAADEEPWLAPWARSGSGSAGVGGG-------DFEAARTAAREAEDHYSRAGNAVGALVARRTEMSLRGDEAMVSVAPLLRKRAYDAVVEGLNQARRLYTDAGQQGLEGLKRTRDPLGLVKAAAMRDGQRLKGEAVSVLRERDVGGSSKLCEQAQSCFSFVDREGLADATADVYAAIHMVTRLASGDTVVAAAEAALGDGASGKATQLLREAKYFYHHAQLSYEELVGQVTTLLEESPHDLDVARKAMQLQDNINRIYD 794
            T  R  TG   A   D E  LAP      G  GV          DFEAAR A +EAE++Y  AGN +GALVARR EMSLRGDEAMVS+  LL KR                                                           DV  S  LCEQAQSCFSFVDRE LADATADVYAAIHMVTRLASGD  VAAAEAA  +GAS  A Q LREAK FYH AQLSYE+LV QVTTLLEE P DL+ AR AM+LQDNIN IYD
Sbjct:  642 TAQRSETGTNPAIGVDGEQRLAPVM----GDGGVXXXXXXXRERDFEAARAAVKEAEENYETAGNEMGALVARRMEMSLRGDEAMVSIDTLLEKRG---------------------------------------------------------GDVEASRTLCEQAQSCFSFVDREALADATADVYAAIHMVTRLASGDAAVAAAEAAFAEGASDNAAQFLREAKSFYHRAQLSYEDLVDQVTTLLEERPGDLEAARNAMELQDNINAIYD 851
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BLAST of mRNA_P-littoralis_Contig142.91.1 vs. uniprot
Match: A0A6H5KCJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.390e-26
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 2 
Query:  788 LRQVVDHEQFDDARTLLSAAALVYERSKDQARLSKVNVISSLVDLVENASGALDEGRYADAEGLVAECLRVRAALAVEQPLSLR 1039
            L QVVDHEQF+DARTLLSAAA VYERS D+ARLSKV  ISSLV+L+E++S AL EGRYADAEGLVAE L VRAALAVEQPL LR
Sbjct:  112 LAQVVDHEQFEDARTLLSAAAQVYERSADKARLSKVGKISSLVNLIESSSRALVEGRYADAEGLVAESLVVRAALAVEQPLCLR 195
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BLAST of mRNA_P-littoralis_Contig142.91.1 vs. uniprot
Match: A0A6H5K7F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-11
Identity = 50/84 (59.52%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:   30 TTAAAADEEPWLAPWARSGSGSAGVGGG-----DFEAARTAAREAEDHYSRAGNAVGALVARRTEMSLRGDEAMVSVAPLLRKR 266
            T A   D E  LAP    G G  GV GG     DFEAAR A +EAE++Y  AGN +G LVARR EMSLRGDEAMVS+ PLL KR
Sbjct:  706 TPAIGVDGEQRLAPVM--GDGGVGVEGGGGRERDFEAARAAVKEAEENYETAGNEMGVLVARRMEMSLRGDEAMVSIDPLLEKR 787
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTX0_ECTSI7.470e-5852.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCJ1_9PHAE2.390e-2680.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7F2_9PHAE1.320e-1159.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:246893..251296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1041
Hectar predicted targeting categoryother localisation
Exons6
Cds size687
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.91.1prot_P-littoralis_Contig142.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 247102..251151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.0212734-UTR-P-littoralis_Contig142:246892..2471011680789667.0212734-UTR-P-littoralis_Contig142:246892..247101Pylaiella littoralis U1_48UTRP-littoralis_Contig142 246893..247101 +
1680789667.0882773-UTR-P-littoralis_Contig142:251151..2512961680789667.0882773-UTR-P-littoralis_Contig142:251151..251296Pylaiella littoralis U1_48UTRP-littoralis_Contig142 251152..251296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.0306885-CDS-P-littoralis_Contig142:247101..2471571680789667.0306885-CDS-P-littoralis_Contig142:247101..247157Pylaiella littoralis U1_48CDSP-littoralis_Contig142 247102..247157 +
1680789667.0390513-CDS-P-littoralis_Contig142:247497..2476681680789667.0390513-CDS-P-littoralis_Contig142:247497..247668Pylaiella littoralis U1_48CDSP-littoralis_Contig142 247498..247668 +
1680789667.0476112-CDS-P-littoralis_Contig142:248154..2482631680789667.0476112-CDS-P-littoralis_Contig142:248154..248263Pylaiella littoralis U1_48CDSP-littoralis_Contig142 248155..248263 +
1680789667.05958-CDS-P-littoralis_Contig142:248888..2490201680789667.05958-CDS-P-littoralis_Contig142:248888..249020Pylaiella littoralis U1_48CDSP-littoralis_Contig142 248889..249020 +
1680789667.070622-CDS-P-littoralis_Contig142:249895..2500141680789667.070622-CDS-P-littoralis_Contig142:249895..250014Pylaiella littoralis U1_48CDSP-littoralis_Contig142 249896..250014 +
1680789667.0795836-CDS-P-littoralis_Contig142:251051..2511511680789667.0795836-CDS-P-littoralis_Contig142:251051..251151Pylaiella littoralis U1_48CDSP-littoralis_Contig142 251052..251151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.91.1

>prot_P-littoralis_Contig142.91.1 ID=prot_P-littoralis_Contig142.91.1|Name=mRNA_P-littoralis_Contig142.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MSLRGDEAMVSVAPLLRKRAYDAVVEGLNQARRLYTDAGQQGLEGLKRTR
DPLGLVKAAAMRDGQRLKGEAVSVLRERDVGGSSKLCEQAQSCFSFVDRE
GLADATADVYAAIHMVTRLASGDTVVAAAEAALGDGASGKATQLLREAKY
FYHHAQLSYEELVGQVTTLLEESPHDLDVARKAMQLQDNINRIYDRWSTM
NSLMTPARCSPLQRLCTSAPRTRLAFQR*
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mRNA from alignment at P-littoralis_Contig142:246893..251296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.91.1 ID=mRNA_P-littoralis_Contig142.91.1|Name=mRNA_P-littoralis_Contig142.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4404bp|location=Sequence derived from alignment at P-littoralis_Contig142:246893..251296+ (Pylaiella littoralis U1_48)
CAACTTTAGATAGGGATGGTACGGGCGCTACTACCGCCGCTGCCGCGGAC
GAAGAGCCATGGTTGGCTCCCTGGGCGCGGAGCGGCAGCGGCAGCGCTGG
CGTTGGCGGGGGCGACTTTGAGGCGGCGAGAACGGCGGCGAGAGAAGCCG
AGGATCACTATTCGAGGGCGGGCAACGCGGTGGGTGCGCTGGTGGCGAGA
AGGACGGAGATGTCTCTCAGGGGTGACGAAGCCATGGTTTCCGTCGCTCC
TCTTCTACGGAAAAGGTAAGCTAATTTCGGCAGTGGTGTAGTCAGGGCCC
TGGGCTCAAAACCATGTTGTGCTGATAAGCGGGGTGCCTGGTACTGTAAG
CCTTGTAGAAGTACGTATTTAGTGTATTATTCCGTGTGATTAGTGTCGGT
GAACAAATACAAGAGGGTGGCAGGGAATTTGCCGTACCTCTGCGTCATGC
CCTGACAGAGGCGCGTGGACGAACCTTTGTAGTAGCAAGTGTGTAAGAAT
GAGGGTGCCCGGCACCTGTTGTCGCTCACCAAATGCTGAATTTGAGTTTT
GCCTTATGGTTGGTCGTTGTGAATGGGCCCTTGGAAATAATGCTACTCCA
TTCAGGGCTTACGACGCCGTTGTCGAAGGGCTCAATCAAGCGCGGCGTCT
CTACACCGACGCCGGGCAGCAAGGGTTGGAGGGGTTGAAGCGCACCCGGG
ACCCCTTAGGTCTGGTCAAGGCTGCAGCCATGCGGGATGGACAACGGCTC
AAGGGCGAGGCCGTCAGCGTGCTCAGGTAGGCGAGACTGTATGCATGCAC
TGGCACACCTTTTCAGGAATTTTGGAGTGGCGTTTTGTGCGTCCATTTAT
TTCGTCGGCCTTGAGATTTTATCATATCCATCTTCAAGTCACGCTATGAC
GCTCCGATAAAACGCGGAGGGTTGTCCTATATGCAGCCGTTATTTCTATG
TACGATAGCTGTTCACGTGTTTTGTGCTTCTGAAAAGACGCGTGCCACCA
GGGAATAATTTGCTCTCGGCGCCGATTCATGAAACACTCGTTTACACGTT
TCTAGTACGAACCTTCTTCAGGTGGCATAGAACACCACCATGCTCTTCGG
TGCCGAGATTCGATCATAAATGCCGAGGTCAAACGTTCAGAAGAATGCAC
AACATTGCCTCGAACTTGCACACATACGAATGCTTATTGGAGCTCTAGCT
GAAGGGGTGGGCCATACCCATTTTCCAATGCTCTTCAAACCTACAAATAC
TATAAACGTCAGAGAGAGAGACGTGGGAGGGTCAAGTAAGCTGTGCGAGC
AAGCCCAAAGCTGCTTCTCCTTCGTCGACAGGGAGGGCTTGGCTGATGCC
ACCGCCGACGTCTACGCTGCGGTGAGGGAGGCTTCTTGCTAAGTCGATTA
TCGTGTCAACTGCTGCGGCAGCAATACATTACCGTTGTTGTCGGTGTTGT
TGATATCGCTACTGCTGTTGCTGATACTGCTACTGTTGTTAAAATGTCGG
TGTAGTCTGTGGTTGTGCAGCTGCCGAGAGAGGACCCCACTAGTGCCACC
TGTTGAAAAATGTCGTATCATACGTAGCTTGTAGATCTGACGGATTAGAT
CGAGGACCGCAATCGACAGTTTGTTATCTAGCTTGCTCCATGCGGACATG
TCATTCAATATGGCTATTTGAGTAGGTAGCAAGACTTCTTCCGGCAAAAT
ATAAAAATGGCGATCACCCATTTGGAACGAAATGACCACGTGATACGTCA
AAGCAGATATCCACACCAAAGAAAGCGTACACAAGTATTTCTGTATTGGG
CTTTTACGGGATGATTGGATGCACCAATCGCGGGGTACACCACTGCTGTG
CCATCCCACACCACAAGAGGAAGGTGAACTGACTCAAACGAAAGTACCGC
GAACTAATCGAGAACAGGTGTTGAATAAGATTCCATCATCCCCCGATGCG
CCTGACATGCCTAGCGACCGCAACTTGCTTGCTTTCGCCCATTCAGATCC
ATATGGTGACCAGACTCGCCTCCGGGGACACCGTCGTAGCGGCAGCGGAA
GCGGCCCTTGGGGACGGGGCGAGCGGCAAGGCCACACAATTGCTCCGGGA
AGCAAAGTATTTTTACCACCATGCCCAGGTGACAAAACAGGAGATAATGT
GTAGTCACGTCATCGAGAAGAAGAAAGTAAGCTTGCCACCACTTTACTTT
TCGTTGTGCGCAGGTCGCTTTTGCAAATCGAAGCGACGAACAGTATTATA
CCTCTTCTGATTGGATCGGCGTAGCGGAACCGCGAGCGGGGGGGGGGAGG
GGGATGGACGACTAGTTTACCGGGGAAGAAATTCTTCTCGTATTACCATG
CGAAAATGAGTCTTGTTTCTTTACTGTCAAGGAGTGACCAGGTTGTACTT
GATTTAACAACGAGTACTTTTTTAGATAAGGCGATGGAGGGAAGTATGAT
AATACCGGGGTGGCTGCGACGGGTAGAGGGGGGCTGGATCGATCATCGAA
GGTTAGCGTCGTACATCTCTCGTTTCATAATTATTACTTATATCATTTAC
CCGACCTAGAAGTTTAGCGTCTTTAATCTCTCGTTTCATCATTAATACTA
TTTACCCCACCCAAAAGCTGAGCGTTTTTTGTTGGCATCCGAGCTTGAGT
GATCGGTTTCCCCCTGCGCCGTAGAGGTAGCGAATCTGTCTCATCTCCGG
TATTAAACAGTTCCTTACATCGATGGCTGCGGCTTCACTTCGAGCAGGGC
GCGGGCAAATGGTGTTGATTTGTTGGCAATGGGAAGGAGGCACGAGGGTC
CGATCATATTATAATTCGTCGACTCTCCTCTCTCTTGTTTTCATGGCGTG
TAGACCGACGACTGACCACATACAATCCAAGTTTTCACACCCGCTCTTCA
CCCTGTTCCTCTCCCCCCCCCCTCGCATCGATACATGCCGTACTTGCTGT
TACTCCTGCTGCTGGTGCGGCCTTGTCGTTTACAAACCCACTGACGGCAA
CAGCTGTCTTATGAAGAATTGGTGGGCCAGGTTACGACGCTGCTGGAAGA
AAGCCCACACGATCTCGACGTGGCGCGGAAAGCGATGCAGCTCCAAGACA
ACATCAACAGGATCTACGACAGGTTTGGATCAAAACAGCACACGCAAGAT
GTTGGGTGTGTGCAGCGGACATATCAGTTGTAAAATCTGGTAGTATCAAA
GCTGACTTGTAGAAGAGATGATACGCCCTCCGTTTAACACCATAGATGTG
AACGAAAAACGTAAGGTACGATTTCGTGTATTCAACGGAGATAGGTAGGT
GGCTGATGGGAATCCTAGGGGGAGGGAACATTGCTTGACAATAGTATTCG
AGCCGGGGCACAAAAACGAGCTGAAAGGAAAAGACTCCGAGCGCAGCGCC
GTGTGTTTCTCTTCCAATGTCATCCCCATTGCCATTCTACGATTTTCTGC
GTTTACGAAGGTTCGGATGGACGCGCGAGCATTTCAGATAGTTCGCATAG
GCCTTGTCAAGCAGCTCGCACCTCCAAACTTCTGGGAGCTAGCCCGTACC
TCGAAATTTTCTGTTAACTCTTCCATCTCTCCTCACTCCCTCTTACCACG
ACGTCGCCAAAATCCCGCGGTAAACAAAACTTGCAAATATACCGTACCGC
CAGCCGACGGGATGGCCAGAGAGCTGTCAAGGTGGAATTGCGCCTTGATT
GTCTAGCGGCAGACGCCTCGCTGGAGAACATTACTCAGGTACCGACCGAC
CTTTGACCCAAACATCGTCCTCAATTACCGCGGCGCACTTACCTCTCTCT
GCACCAATGTATCTTACTCGAAGTATAAGAAAACACGGAAGCAAAGCGTG
AAGGGTCAACATGCATGCCGGGCACTAGACTCTTTTGTGAAAAATGAAAT
ATCTTCATCCCGCTGAACCAATACCACGAGGTCTGGTGGTATGGTTATCG
TCGGTCCGTAAGATAGTTCTTCCGGGACACACACCGCCAAGGCGATCGAA
TGACCGCGCACACGCGAAATCCCTGACAAAAGTTGTTCACCGCAGAGAGA
GAGGCCCTTACTTCGTAGCGCCGCGCCTTTGCTGCTTGCTTGCATCTGAC
TACGTAAGCGAATCCGAATCACGCAACAAACGCCAGCTTACCTCGACACT
GACACACAGGTGGTCGACCATGAACAGTTTGATGACGCCCGCACGCTGCT
CTCCGCTGCAGCGCTTGTGTACGAGCGCTCCAAGGACCAGGCTCGCCTTT
CAAAGGTGAACGTCATATCGTCCCTTGTCGACCTCGTCGAAAACGCCTCT
GGGGCTCTCGACGAGGGCCGTTACGCCGACGCCGAAGGTCTGGTCGCCGA
GTGCTTGCGCGTTCGTGCCGCCCTGGCCGTCGAGCAGCCGCTGTCTCTGC
GCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:246893..251296+

>mRNA_P-littoralis_Contig142.91.1 ID=mRNA_P-littoralis_Contig142.91.1|Name=mRNA_P-littoralis_Contig142.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig142:246893..251296+ (Pylaiella littoralis U1_48)
ATGTCTCTCAGGGGTGACGAAGCCATGGTTTCCGTCGCTCCTCTTCTACG
GAAAAGGGCTTACGACGCCGTTGTCGAAGGGCTCAATCAAGCGCGGCGTC
TCTACACCGACGCCGGGCAGCAAGGGTTGGAGGGGTTGAAGCGCACCCGG
GACCCCTTAGGTCTGGTCAAGGCTGCAGCCATGCGGGATGGACAACGGCT
CAAGGGCGAGGCCGTCAGCGTGCTCAGAGAGAGAGACGTGGGAGGGTCAA
GTAAGCTGTGCGAGCAAGCCCAAAGCTGCTTCTCCTTCGTCGACAGGGAG
GGCTTGGCTGATGCCACCGCCGACGTCTACGCTGCGATCCATATGGTGAC
CAGACTCGCCTCCGGGGACACCGTCGTAGCGGCAGCGGAAGCGGCCCTTG
GGGACGGGGCGAGCGGCAAGGCCACACAATTGCTCCGGGAAGCAAAGTAT
TTTTACCACCATGCCCAGCTGTCTTATGAAGAATTGGTGGGCCAGGTTAC
GACGCTGCTGGAAGAAAGCCCACACGATCTCGACGTGGCGCGGAAAGCGA
TGCAGCTCCAAGACAACATCAACAGGATCTACGACAGGTGGTCGACCATG
AACAGTTTGATGACGCCCGCACGCTGCTCTCCGCTGCAGCGCTTGTGTAC
GAGCGCTCCAAGGACCAGGCTCGCCTTTCAAAGGTGA
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