mRNA_P-littoralis_Contig101.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.49.1
Unique NamemRNA_P-littoralis_Contig101.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:126670..127153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.7269182-CDS-P-littoralis_Contig101:126669..1267491680789348.7269182-CDS-P-littoralis_Contig101:126669..126749Pylaiella littoralis U1_48CDSP-littoralis_Contig101 126670..126749 +
1680789348.7349782-CDS-P-littoralis_Contig101:127071..1271531680789348.7349782-CDS-P-littoralis_Contig101:127071..127153Pylaiella littoralis U1_48CDSP-littoralis_Contig101 127072..127153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.49.1prot_P-littoralis_Contig101.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 126670..127153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.49.1

>prot_P-littoralis_Contig101.49.1 ID=prot_P-littoralis_Contig101.49.1|Name=mRNA_P-littoralis_Contig101.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
DNFTDEQAEKFEGWLNGKKSGMDAVDRFSTVEGFKDLFKRLHTFALSADQ
ATVS
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mRNA from alignment at P-littoralis_Contig101:126670..127153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.49.1 ID=mRNA_P-littoralis_Contig101.49.1|Name=mRNA_P-littoralis_Contig101.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=484bp|location=Sequence derived from alignment at P-littoralis_Contig101:126670..127153+ (Pylaiella littoralis U1_48)
GACAACTTCACGGATGAGCAGGCGGAAAAGTTCGAGGGGTGGCTGAATGG
GAAGAAGAGCGGCATGGACGCTGTTGACAGGTTGACGTATCTACAGCTAC
AAGAGTTGTATCGTTTAATCTTCGACACGGGAGTCTCAAAGTGAGTTTAT
TCATATTCTGCTCTAGAACATCGCCATTTATCAAAGATCATGGTAACCCT
GTTTACTATCAAACCACGCGCAAGTAATGAGAAGGCCGTAATTTTGGTGT
TGGTTGCTGCGCACGTCGTGGCCGGAAACTTTCATACGTTGACACATTCC
AAAGCTCGAAAGATCATGTCCTTACATCCTCTGGCTGGTGTTGACGAGAC
TCACATGCATCACCGCCCACCGAAAAATCGGTTATTACTCTTGATCGCGC
AGGTTCTCCACTGTGGAGGGTTTCAAAGATCTCTTCAAGCGCTTGCACAC
ATTTGCGCTGTCGGCTGACCAAGCAACTGTCAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:126670..127153+

>mRNA_P-littoralis_Contig101.49.1 ID=mRNA_P-littoralis_Contig101.49.1|Name=mRNA_P-littoralis_Contig101.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig101:126670..127153+ (Pylaiella littoralis U1_48)
GACAACTTCACGGATGAGCAGGCGGAAAAGTTCGAGGGGTGGCTGAATGG
GAAGAAGAGCGGCATGGACGCTGTTGACAGGTTCTCCACTGTGGAGGGTT
TCAAAGATCTCTTCAAGCGCTTGCACACATTTGCGCTGTCGGCTGACCAA
GCAACTGTCAGT
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