mRNA_P-littoralis_Contig1413.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1413.2.1
Unique NamemRNA_P-littoralis_Contig1413.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: C6J7T2_9BACL (Uncharacterized protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=C6J7T2_9BACL)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+P+HFRRR+TRPVSYYALFK  LLLS+  GCL   TSF
Sbjct:    4 LAPLHFRRRVTRPVSYYALFKWWLLLSQHPGCLCNSTSF 42
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: A0A6A5LAB7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LAB7_LUPAL)

HSP 1 Score: 58.9 bits (141), Expect = 3.230e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   10 FGKLLSPVHFRRRITRPVSYYALFKGLLLLSKP 108
            FGKLLSP +FRR+  RPVSYYALFKGLLLLS+P
Sbjct:   18 FGKLLSPKNFRRKTARPVSYYALFKGLLLLSEP 50
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: I7J2P1_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Taylorella asinigenitalis 14/45 TaxID=1091495 RepID=I7J2P1_9BURK)

HSP 1 Score: 57.4 bits (137), Expect = 5.420e-10
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+P+H  RR TR VSYYA FKG LLLS+P  CL LPTSF
Sbjct:   13 LAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCLCLPTSF 51
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: L9U5K2_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae BH1 TaxID=1204738 RepID=L9U5K2_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 7.860e-10
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+P+H  RR TR VSYYA FKG LLLS+P  CLSLPTSF
Sbjct:   58 LAPLHLPRRPTRLVSYYAFFKGWLLLSQPPSCLSLPTSF 96
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: A0A418V1F8_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cavernae TaxID=2320857 RepID=A0A418V1F8_9DEIO)

HSP 1 Score: 57.8 bits (138), Expect = 7.990e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTS 135
            LSP HFRR +TRPVSYYALF+G LLLS+P GCL   TS
Sbjct:   42 LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTS 79
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: R6UK25_9FIRM (Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 TaxID=1262981 RepID=R6UK25_9FIRM)

HSP 1 Score: 60.5 bits (145), Expect = 8.430e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+PVHFRRR+TR VS YALF+G LLLS+P  CL +PTSF
Sbjct:  179 LAPVHFRRRVTRLVSCYALFEGWLLLSQPPSCLCIPTSF 217
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: A0A0H3KX17_BURM1 (Uncharacterized protein n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) TaxID=395019 RepID=A0A0H3KX17_BURM1)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-9
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+P+H  RR TR VSYYA FKG LLLS+P  C SLPTSF
Sbjct:   83 LAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSF 121
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BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: A0A0J8AWR0_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AWR0_BETVV)

HSP 1 Score: 56.6 bits (135), Expect = 2.030e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+P++  RR TRPVSYYA FKG LLLS+P GCL L TSF
Sbjct:   40 LAPLNLPRRPTRPVSYYAFFKGWLLLSQPPGCLCLSTSF 78
[Close]
BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: Q9RS75_DEIRA (Uncharacterized protein n=2 Tax=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) TaxID=243230 RepID=Q9RS75_DEIRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.380e-9
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTS 135
            LSP HFRR +TRPVSYYALF+G LLLS+P GCL   TS
Sbjct:   85 LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTS 122
[Close]
BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Match: A0A6I7WGG5_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium HT1 TaxID=1916061 RepID=A0A6I7WGG5_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.660e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 LSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF 138
            L+PV+  R+ TRPVSYYA FKG LLLS+P GCL L TSF
Sbjct:   13 LAPVNLPRKPTRPVSYYAFFKGWLLLSQPPGCLGLFTSF 51
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1413.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
C6J7T2_9BACL1.090e-1071.79Uncharacterized protein n=2 Tax=unclassified Paeni... [more]
A0A6A5LAB7_LUPAL3.230e-1081.82Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
I7J2P1_9BURK5.420e-1069.23Uncharacterized protein (Fragment) n=1 Tax=Taylore... [more]
L9U5K2_9GAMM7.860e-1071.79Uncharacterized protein n=1 Tax=Halomonas titanica... [more]
A0A418V1F8_9DEIO7.990e-1073.68Uncharacterized protein n=1 Tax=Deinococcus cavern... [more]
R6UK25_9FIRM8.430e-1071.79Uncharacterized protein n=1 Tax=Erysipelotrichacea... [more]
A0A0H3KX17_BURM11.940e-969.23Uncharacterized protein n=1 Tax=Burkholderia multi... [more]
A0A0J8AWR0_BETVV2.030e-969.23Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
Q9RS75_DEIRA2.380e-973.68Uncharacterized protein n=2 Tax=Deinococcus radiod... [more]
A0A6I7WGG5_9GAMM2.660e-969.23Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1413contigP-littoralis_Contig1413:20399..20536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4155.Migut.D01397.1.p
Model size138
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.95e-14
EggNOG OGs2E30T@1|root,2SA69@2759|Eukaryota,37XUE@33090|Viridiplantae,3GWDE@35493|Streptophyta,44U28@71274|asterids
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.9437556-CDS-P-littoralis_Contig1413:20398..205361680789663.9437556-CDS-P-littoralis_Contig1413:20398..20536Pylaiella littoralis U1_48CDSP-littoralis_Contig1413 20399..20536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1413.2.1prot_P-littoralis_Contig1413.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1413 20399..20536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1413.2.1

>prot_P-littoralis_Contig1413.2.1 ID=prot_P-littoralis_Contig1413.2.1|Name=mRNA_P-littoralis_Contig1413.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
SHSFGKLLSPVHFRRRITRPVSYYALFKGLLLLSKPSGCLSLPTSF
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mRNA from alignment at P-littoralis_Contig1413:20399..20536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1413.2.1 ID=mRNA_P-littoralis_Contig1413.2.1|Name=mRNA_P-littoralis_Contig1413.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig1413:20399..20536- (Pylaiella littoralis U1_48)
TCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGAT
TACTCGACCAGTGAGCTATTACGCACTCTTTAAAGGATTGCTGCTTCTAA
GCAAACCTTCTGGTTGTTTAAGTCTTCCCACCTCCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1413:20399..20536-

>mRNA_P-littoralis_Contig1413.2.1 ID=mRNA_P-littoralis_Contig1413.2.1|Name=mRNA_P-littoralis_Contig1413.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig1413:20399..20536- (Pylaiella littoralis U1_48)
TCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGAT
TACTCGACCAGTGAGCTATTACGCACTCTTTAAAGGATTGCTGCTTCTAA
GCAAACCTTCTGGTTGTTTAAGTCTTCCCACCTCCTTT
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