mRNA_P-littoralis_Contig1412.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1412.2.1
Unique NamemRNA_P-littoralis_Contig1412.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.270e-23
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    4 VRGAPLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNT 207
            VRG PLE WRVKAREYP LASL R VL IPA Q QSERVF SAGLVVTK R+++DPENV L +FLRNT
Sbjct:  476 VRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.520e-16
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRN 204
            PL+ WR K  EYPLLA+L R VL IP+SQ QSERVF +AGL VT  RS+L  ENVEL ++LRN
Sbjct:  483 PLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRN 545
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI00196298CF (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196298CF)

HSP 1 Score: 73.6 bits (179), Expect = 3.300e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            PL  WR  + +YPLL+ LV+E L IPA+   SERVFL+AG +VT  RSQL PENV++ +FL+  ++
Sbjct:  169 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFLTAGDIVTAQRSQLLPENVDMLIFLKKNMT 234
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI001963A909 (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001963A909)

HSP 1 Score: 71.2 bits (173), Expect = 4.560e-14
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            PL  WR  + +YPLL+ LV+E L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  ++
Sbjct:   76 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNMT 141
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI001962CA60 (zinc finger BED domain-containing protein 4-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001962CA60)

HSP 1 Score: 71.2 bits (173), Expect = 5.110e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            PL  WR  + +YPLL+ LV+E L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  ++
Sbjct:  238 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNMT 303
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI00196580EF (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196580EF)

HSP 1 Score: 71.2 bits (173), Expect = 5.330e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            PL  WR  + +YPLL+ LV+E L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  ++
Sbjct:  244 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNMT 309
[Close]
BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 66.6 bits (161), Expect = 7.850e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   13 APLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            +PLE W+V A  YP+LASL +  L IPA+   SERVF +AG +V+  RS + PE+V++ +FL+   S
Sbjct:   22 SPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLKKNQS 88
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BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI001964118B (zinc finger BED domain-containing protein 4-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001964118B)

HSP 1 Score: 71.2 bits (173), Expect = 8.060e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTLS 213
            PL  WR  + +YPLL+ LV+E L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  ++
Sbjct:  366 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNMT 431
[Close]
BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.420e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   61 ASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            +S    VL IPASQ QSERVF SAGLVVTK R+++DPENVEL +FLRN L
Sbjct:  423 SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVL 472
[Close]
BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 65.5 bits (158), Expect = 6.570e-12
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    4 VRGAPLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            V G PL  W+    +YP LA++ R  L +P +   SERVF +AG +VT  RS L PENV++ MFL+  L
Sbjct:   63 VDGDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLKKNL 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1412.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.270e-2376.47Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI2.520e-1665.08Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI00196298CF3.300e-1453.03zinc finger BED domain-containing protein 4-like n... [more]
UPI001963A9094.560e-1451.52zinc finger BED domain-containing protein 4-like n... [more]
UPI001962CA605.110e-1351.52zinc finger BED domain-containing protein 4-like n... [more]
UPI00196580EF5.330e-1351.52zinc finger BED domain-containing protein 4-like n... [more]
A0A1A8CIX7_9TELE7.850e-1347.76Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI001964118B8.060e-1351.52zinc finger BED domain-containing protein 4-like n... [more]
A0A6H5JJV8_9PHAE5.420e-1270.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI00109FC6126.570e-1246.38zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1412contigP-littoralis_Contig1412:9348..9560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.13e-17
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size213
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.7690392-CDS-P-littoralis_Contig1412:9347..95601680789663.7690392-CDS-P-littoralis_Contig1412:9347..9560Pylaiella littoralis U1_48CDSP-littoralis_Contig1412 9348..9560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1412.2.1prot_P-littoralis_Contig1412.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1412 9348..9560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1412.2.1

>prot_P-littoralis_Contig1412.2.1 ID=prot_P-littoralis_Contig1412.2.1|Name=mRNA_P-littoralis_Contig1412.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MVRGAPLEGWRVKAREYPLLASLVREVLRIPASQTQSERVFLSAGLVVTK
ARSQLDPENVELTMFLRNTLS
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mRNA from alignment at P-littoralis_Contig1412:9348..9560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1412.2.1 ID=mRNA_P-littoralis_Contig1412.2.1|Name=mRNA_P-littoralis_Contig1412.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1412:9348..9560- (Pylaiella littoralis U1_48)
ATGGTCCGCGGTGCCCCACTGGAAGGGTGGCGTGTAAAGGCACGGGAGTA
TCCCTTGCTGGCCTCATTGGTTCGCGAAGTGCTGCGCATCCCAGCATCCC
AGACGCAGTCGGAGCGCGTTTTTTTGTCGGCAGGACTAGTCGTAACAAAG
GCACGTTCTCAACTGGACCCCGAAAACGTGGAGCTCACGATGTTCCTGCG
TAATACTCTGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1412:9348..9560-

>mRNA_P-littoralis_Contig1412.2.1 ID=mRNA_P-littoralis_Contig1412.2.1|Name=mRNA_P-littoralis_Contig1412.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1412:9348..9560- (Pylaiella littoralis U1_48)
ATGGTCCGCGGTGCCCCACTGGAAGGGTGGCGTGTAAAGGCACGGGAGTA
TCCCTTGCTGGCCTCATTGGTTCGCGAAGTGCTGCGCATCCCAGCATCCC
AGACGCAGTCGGAGCGCGTTTTTTTGTCGGCAGGACTAGTCGTAACAAAG
GCACGTTCTCAACTGGACCCCGAAAACGTGGAGCTCACGATGTTCCTGCG
TAATACTCTGTCC
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