mRNA_P-littoralis_Contig101.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.18.1
Unique NamemRNA_P-littoralis_Contig101.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Match: D8LR57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR57_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.380e-28
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 3 
Query: 1107 STPAVVPTASEVSRILTKLGPKGVSELTLYKNLTFDELVRVCRYTGGVDLSKRLPKATMAERLNALCVEQGALAKELPIAPGRAPAGR-RGERGEG 1391
            S   VVPTASEV+RIL KLGPKG SEL LYKNLTFDELV+VCRYTG +DLSKRLPKATMAERL++LC E+GALA EL  A GRA  G+  GERG G
Sbjct:  188 SAAVVVPTASEVTRILAKLGPKGASELALYKNLTFDELVKVCRYTGVMDLSKRLPKATMAERLSSLCSERGALAVELRNA-GRASGGKAEGERGIG 282
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BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.110e-24
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 3 
Query: 1107 STPAVVPTASEVSRILTKLGPKGVSELTLYKNLTFDELVRVCRYTGGVDLSKRLPKATMAERLNALCVEQGALAKELP---IAPGRAPAGRRG 1376
            S   VVPT++EV+ IL KLGPKG SEL LYKNL FDELV++CRYTG VDLSKRLPKATMAERL++LC E+GALA EL    +A GR     RG
Sbjct:  895 SAAEVVPTSTEVTSILIKLGPKGASELALYKNLAFDELVKLCRYTGSVDLSKRLPKATMAERLSSLCSERGALAVELRNAGLAKGRKAESERG 987
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR57_ECTSI2.380e-2875.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLD2_9PHAE2.110e-2467.74Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:79635..81097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1393
Hectar predicted targeting categoryother localisation
Exons2
Cds size999
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.534678-UTR-P-littoralis_Contig101:79634..797571680789348.534678-UTR-P-littoralis_Contig101:79634..79757Pylaiella littoralis U1_48UTRP-littoralis_Contig101 79635..79757 +
1680789348.563255-UTR-P-littoralis_Contig101:80826..810971680789348.563255-UTR-P-littoralis_Contig101:80826..81097Pylaiella littoralis U1_48UTRP-littoralis_Contig101 80827..81097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.5458436-CDS-P-littoralis_Contig101:79757..806841680789348.5458436-CDS-P-littoralis_Contig101:79757..80684Pylaiella littoralis U1_48CDSP-littoralis_Contig101 79758..80684 +
1680789348.553798-CDS-P-littoralis_Contig101:80754..808261680789348.553798-CDS-P-littoralis_Contig101:80754..80826Pylaiella littoralis U1_48CDSP-littoralis_Contig101 80755..80826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.18.1prot_P-littoralis_Contig101.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 79758..80826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.18.1

>prot_P-littoralis_Contig101.18.1 ID=prot_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp
MISDIATQEDSLLLESQPQWPQQQQQQQQQRETQHETHQEGMMAGCSPTT
GGARNSNDGGGVVQGGHPSSPRNETASSPSTAFPPSLPLLPLSPPRRPPT
AATASVTTGDDDGAAASPSGGGKDGDNAHDDHLWHQVLHRQGAASAPPPA
SPSSFSTSSSSSTEADPSSPNASDREQGAASTTVSATAVLPSPSPHRENA
RATSATSGRSDVLGASGVGATAQAPGGELEAAAMVSFAQVAPLACAGGDG
GRSGGSTDSVNGSNPKRQQSIDNSGGSISSSNNISNSGNNDTDNKRSSSS
NNNNNSNNNVVVRWRHNHGLPLRLPPPPPHPQ*
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mRNA from alignment at P-littoralis_Contig101:79635..81097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.18.1 ID=mRNA_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1463bp|location=Sequence derived from alignment at P-littoralis_Contig101:79635..81097+ (Pylaiella littoralis U1_48)
GGAGCACCATCGTATTCCTCCTCAAGACGAACAGCTGCGTCAGCATCAAC
GAGTCAGAAAAAGCCGAGACAGCAACGGCCGCTCGGAGGGCTGGAGCAGC
CATCGCGCGACTGCCTGTTGGACATGATCAGCGACATCGCCACCCAGGAG
GACTCTCTTCTCCTCGAGTCACAGCCGCAGTGGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGCGGGAGACCCAGCACGAAACACACCAGGAAGGGATGA
TGGCCGGGTGTTCTCCTACGACAGGTGGTGCTAGAAACAGCAACGACGGC
GGTGGCGTTGTCCAAGGGGGCCACCCCTCGTCTCCTAGAAATGAGACGGC
GTCTTCTCCGTCAACCGCTTTCCCACCATCGCTGCCGCTGTTGCCGCTCT
CCCCACCCAGACGGCCGCCCACTGCTGCGACTGCTTCGGTGACTACAGGT
GATGATGACGGGGCCGCAGCATCACCTAGCGGGGGAGGGAAAGATGGTGA
CAACGCCCACGACGACCATCTTTGGCATCAAGTTCTGCACCGCCAGGGCG
CGGCCTCAGCACCTCCGCCAGCTTCCCCGTCCTCCTTCTCCACGTCGTCA
TCGTCCTCCACCGAAGCAGACCCATCGTCGCCAAACGCGTCAGACAGAGA
GCAAGGAGCAGCATCTACCACAGTGTCGGCCACAGCTGTGCTACCCTCCC
CAAGCCCTCATCGCGAGAATGCAAGGGCAACATCGGCAACCAGCGGCAGG
TCGGATGTGCTGGGAGCGTCAGGGGTGGGGGCAACGGCGCAAGCGCCCGG
GGGGGAGTTGGAAGCGGCGGCCATGGTGTCTTTCGCGCAGGTTGCTCCGC
TAGCGTGCGCAGGGGGTGACGGTGGCCGCAGTGGCGGCAGTACGGACAGC
GTCAACGGATCGAACCCGAAGCGACAACAGAGTATCGACAACAGTGGCGG
CAGCATCAGCAGTAGCAACAACATCAGCAACAGCGGCAACAACGACACTG
ACAACAAAAGAAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAAC
AACAACAAGGGTGGCTCGAAAGGGTTTCCATCTTTATCTTCGTCTTCAGG
CGGCGGCGGCCTTATTTGCGGTGGTAGTTCGTTGGCGACACAACCACGGA
CTTCCTCTTCGTCTTCCGCCACCACCTCCACACCCGCAGTAGTACCCACC
GCCTCCGAGGTTTCACGCATCCTTACCAAGCTAGGGCCAAAGGGTGTGTC
CGAGCTGACGCTCTACAAGAACCTCACCTTCGACGAGCTGGTGAGGGTGT
GCCGCTACACAGGGGGCGTCGACCTTTCCAAACGCCTTCCCAAGGCCACA
ATGGCGGAGCGCCTCAACGCTCTCTGCGTGGAGCAGGGGGCCTTGGCCAA
GGAATTACCGATCGCGCCAGGGAGAGCACCGGCCGGAAGGAGAGGGGAAC
GAGGAGAAGGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:79635..81097+

>mRNA_P-littoralis_Contig101.18.1 ID=mRNA_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig101:79635..81097+ (Pylaiella littoralis U1_48)
ATGATCAGCGACATCGCCACCCAGGAGGACTCTCTTCTCCTCGAGTCACA
GCCGCAGTGGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGACCC
AGCACGAAACACACCAGGAAGGGATGATGGCCGGGTGTTCTCCTACGACA
GGTGGTGCTAGAAACAGCAACGACGGCGGTGGCGTTGTCCAAGGGGGCCA
CCCCTCGTCTCCTAGAAATGAGACGGCGTCTTCTCCGTCAACCGCTTTCC
CACCATCGCTGCCGCTGTTGCCGCTCTCCCCACCCAGACGGCCGCCCACT
GCTGCGACTGCTTCGGTGACTACAGGTGATGATGACGGGGCCGCAGCATC
ACCTAGCGGGGGAGGGAAAGATGGTGACAACGCCCACGACGACCATCTTT
GGCATCAAGTTCTGCACCGCCAGGGCGCGGCCTCAGCACCTCCGCCAGCT
TCCCCGTCCTCCTTCTCCACGTCGTCATCGTCCTCCACCGAAGCAGACCC
ATCGTCGCCAAACGCGTCAGACAGAGAGCAAGGAGCAGCATCTACCACAG
TGTCGGCCACAGCTGTGCTACCCTCCCCAAGCCCTCATCGCGAGAATGCA
AGGGCAACATCGGCAACCAGCGGCAGGTCGGATGTGCTGGGAGCGTCAGG
GGTGGGGGCAACGGCGCAAGCGCCCGGGGGGGAGTTGGAAGCGGCGGCCA
TGGTGTCTTTCGCGCAGGTTGCTCCGCTAGCGTGCGCAGGGGGTGACGGT
GGCCGCAGTGGCGGCAGTACGGACAGCGTCAACGGATCGAACCCGAAGCG
ACAACAGAGTATCGACAACAGTGGCGGCAGCATCAGCAGTAGCAACAACA
TCAGCAACAGCGGCAACAACGACACTGACAACAAAAGAAGCAGCAGCAGC
AACAACAACAACAACAGCAACAACAACGTGGTAGTTCGTTGGCGACACAA
CCACGGACTTCCTCTTCGTCTTCCGCCACCACCTCCACACCCGCAGTAG
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