mRNA_P-littoralis_Contig101.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.15.1
Unique NamemRNA_P-littoralis_Contig101.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:78143..78875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size603
Hectar predicted targeting categoryother localisation
Exons2
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.4828064-UTR-P-littoralis_Contig101:78142..781461680789348.4828064-UTR-P-littoralis_Contig101:78142..78146Pylaiella littoralis U1_48UTRP-littoralis_Contig101 78143..78146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.491324-CDS-P-littoralis_Contig101:78146..783901680789348.491324-CDS-P-littoralis_Contig101:78146..78390Pylaiella littoralis U1_48CDSP-littoralis_Contig101 78147..78390 +
1680789348.5042646-CDS-P-littoralis_Contig101:78522..788751680789348.5042646-CDS-P-littoralis_Contig101:78522..78875Pylaiella littoralis U1_48CDSP-littoralis_Contig101 78523..78875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.15.1prot_P-littoralis_Contig101.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 78147..78875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.15.1

>prot_P-littoralis_Contig101.15.1 ID=prot_P-littoralis_Contig101.15.1|Name=mRNA_P-littoralis_Contig101.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp
MPRIFLPAVTPNNNALLARDTQHQQHQQQEHQQKQKQQSAAFEFEGGSGE
ESTDEDDHDEDGGSSPDLLRYSKNDVGINQACREQTAPPSRDREERDDDI
MPCGNKRKTGEQQAVPVTSKKARSTTIGGTSTSTSTSTSTNSRSRDKYST
ASAPLVDSNSRGVSSAAGDSTTVGAGGRRAPPQLSSSLPRPVLEVPPPA
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mRNA from alignment at P-littoralis_Contig101:78143..78875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.15.1 ID=mRNA_P-littoralis_Contig101.15.1|Name=mRNA_P-littoralis_Contig101.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=733bp|location=Sequence derived from alignment at P-littoralis_Contig101:78143..78875+ (Pylaiella littoralis U1_48)
CACGATGCCACGGATCTTCTTGCCAGCGGTGACACCCAACAACAACGCAC
TGCTAGCTCGCGATACGCAGCACCAGCAGCACCAGCAGCAGGAGCATCAA
CAAAAACAAAAACAACAGAGCGCCGCTTTCGAATTTGAAGGGGGAAGCGG
CGAGGAGAGCACCGACGAAGATGATCATGATGAAGACGGGGGTTCGAGCC
CGGATCTTCTCCGCTACTCCAAGAACGACGTCGGCATCAACCAAGCATGC
CAGCAGCGGCAGCAGCCGGAGCAGCGGAAGCAACCGGCCATTACTGGAGG
TGGTGCACACGCAAAAGGGCGACGCAGTGCTAGCGGCAGCAGCAGCAGCA
GCAGCAGCAGCGGCGGCGGCGGCGGCGTAGGTCGCGAACAGACAGCGCCG
CCGAGCCGAGACAGAGAAGAACGAGATGACGATATCATGCCGTGCGGCAA
CAAGCGGAAGACAGGAGAACAACAAGCAGTGCCCGTGACCTCCAAAAAGG
CACGCTCAACGACCATCGGCGGCACCAGCACCAGCACTAGCACCAGCACC
AGCACCAACAGTCGTAGCAGAGACAAGTACAGCACAGCAAGTGCGCCGCT
GGTAGACTCAAACAGCAGAGGTGTCAGCAGTGCTGCTGGTGATTCGACGA
CTGTTGGTGCGGGGGGTCGACGTGCGCCACCGCAACTCTCTTCTTCCCTG
CCGCGACCAGTCCTTGAGGTCCCCCCTCCTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:78143..78875+

>mRNA_P-littoralis_Contig101.15.1 ID=mRNA_P-littoralis_Contig101.15.1|Name=mRNA_P-littoralis_Contig101.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig101:78143..78875+ (Pylaiella littoralis U1_48)
ATGCCACGGATCTTCTTGCCAGCGGTGACACCCAACAACAACGCACTGCT
AGCTCGCGATACGCAGCACCAGCAGCACCAGCAGCAGGAGCATCAACAAA
AACAAAAACAACAGAGCGCCGCTTTCGAATTTGAAGGGGGAAGCGGCGAG
GAGAGCACCGACGAAGATGATCATGATGAAGACGGGGGTTCGAGCCCGGA
TCTTCTCCGCTACTCCAAGAACGACGTCGGCATCAACCAAGCATGTCGCG
AACAGACAGCGCCGCCGAGCCGAGACAGAGAAGAACGAGATGACGATATC
ATGCCGTGCGGCAACAAGCGGAAGACAGGAGAACAACAAGCAGTGCCCGT
GACCTCCAAAAAGGCACGCTCAACGACCATCGGCGGCACCAGCACCAGCA
CTAGCACCAGCACCAGCACCAACAGTCGTAGCAGAGACAAGTACAGCACA
GCAAGTGCGCCGCTGGTAGACTCAAACAGCAGAGGTGTCAGCAGTGCTGC
TGGTGATTCGACGACTGTTGGTGCGGGGGGTCGACGTGCGCCACCGCAAC
TCTCTTCTTCCCTGCCGCGACCAGTCCTTGAGGTCCCCCCTCCTGCT
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