mRNA_P-littoralis_Contig1408.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1408.1.1
Unique NamemRNA_P-littoralis_Contig1408.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.770e-11
Identity = 30/86 (34.88%), Postives = 51/86 (59.30%), Query Frame = 2 
Query:    8 MFRGQMDSLFVQEECDDALRNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY 265
            +F  Q  SL  QE C  A+ + + I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y
Sbjct:  377 VFTSQFRSLLEQERCLGAIESKKTIRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFY 462
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.690e-9
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 2 
Query:    8 MFRGQMDSLFVQEECDDALRNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY 265
            +F  Q  SL  QE C  A+ +   I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E+W+  +  Y
Sbjct:   73 VFTSQFRSLLKQERCLGAIESKNTIRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFY 158
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.170e-7
Identity = 26/81 (32.10%), Postives = 47/81 (58.02%), Query Frame = 2 
Query:    8 MFRGQMDSLFVQEECDDALRNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWEL 250
            +F  Q   L+  ++C +A+ +   I+VG ++     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E+W +
Sbjct:  136 VFESQFRMLWQLDDCLNAIVSEETIRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRI 216
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.840e-5
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:   65 RNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY 265
            + T  I  G  +L  + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y
Sbjct:  105 KETIRISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYY 171
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.570e-5
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:   65 RNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY 265
            + T  +  G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y
Sbjct:   60 KETIRVSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFY 126
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BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 9.100e-5
Identity = 20/67 (29.85%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:   65 RNTRPIKVGDNNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY 265
            + T  I  G  +   + L+V  G  AV++A +AW +I+ K+ VP++V  +   G P+E+W+  + ++
Sbjct:  105 KETIRISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLF 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5LNE2_9PHAE3.770e-1134.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE5.690e-932.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE4.170e-732.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQQ7_9PHAE1.840e-534.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKK7_9PHAE4.570e-531.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH8_9PHAE9.100e-529.85Integrase catalytic domain-containing protein (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1408contigP-littoralis_Contig1408:225..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size265
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.7301188-CDS-P-littoralis_Contig1408:224..4821680789659.7301188-CDS-P-littoralis_Contig1408:224..482Pylaiella littoralis U1_48CDSP-littoralis_Contig1408 225..482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.743945-UTR-P-littoralis_Contig1408:482..4891680789659.743945-UTR-P-littoralis_Contig1408:482..489Pylaiella littoralis U1_48UTRP-littoralis_Contig1408 483..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1408.1.1prot_P-littoralis_Contig1408.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1408 225..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1408.1.1

>prot_P-littoralis_Contig1408.1.1 ID=prot_P-littoralis_Contig1408.1.1|Name=mRNA_P-littoralis_Contig1408.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MFRGQMDSLFVQEECDDALRNTRPIKVGDNNLRPADLHVIFGVPAVEKAQ
RAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMY
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mRNA from alignment at P-littoralis_Contig1408:225..489-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1408.1.1 ID=mRNA_P-littoralis_Contig1408.1.1|Name=mRNA_P-littoralis_Contig1408.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=265bp|location=Sequence derived from alignment at P-littoralis_Contig1408:225..489- (Pylaiella littoralis U1_48)
CTTTAATATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGT
GCGATGACGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAATAAT
TTAAGACCAGCAGACTTGCACGTAATTTTTGGTGTACCAGCAGTAGAGAA
GGCGCAGAGAGCGTGGAGTATCATACTGGAGAAGGTCACTGTTCCATCTC
TTGTCGAGCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGAGCTG
ATGGTAGAGATGTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1408:225..489-

>mRNA_P-littoralis_Contig1408.1.1 ID=mRNA_P-littoralis_Contig1408.1.1|Name=mRNA_P-littoralis_Contig1408.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1408:225..489- (Pylaiella littoralis U1_48)
ATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGTGCGATGA
CGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAATAATTTAAGAC
CAGCAGACTTGCACGTAATTTTTGGTGTACCAGCAGTAGAGAAGGCGCAG
AGAGCGTGGAGTATCATACTGGAGAAGGTCACTGTTCCATCTCTTGTCGA
GCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGAGCTGATGGTAG
AGATGTAT
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