mRNA_P-littoralis_Contig1404.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1404.2.1
Unique NamemRNA_P-littoralis_Contig1404.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 6.270e-58
Identity = 94/133 (70.68%), Postives = 107/133 (80.45%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+GW MCPFTLGRSFTGKEGFPT+A++VTVDH G  + VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GT   R+GC+LIVDNGYHE  WVTL+APSKYP    D AFS+ LESVRKDV CF
Sbjct:  115 HIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHE--WVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF 245
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.470e-57
Identity = 92/128 (71.88%), Postives = 104/128 (81.25%), Query Frame = 3 
Query:  249 MCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            MCPFTLGRSFTGKEGFPT+A+EVTVDH G A+ VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRK +GT  TR+GC+LI+DN YHE  WVTL+APSKYP    D AFS+ LESVRKDVECF
Sbjct:    1 MCPFTLGRSFTGKEGFPTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHE--WVTLIAPSKYPQSNKDTAFSRHLESVRKDVECF 126
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.390e-53
Identity = 97/156 (62.18%), Postives = 111/156 (71.15%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNG----------YHE-------------MSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAG A+ VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GT  TR+GC+LIVDNG          +H+             + WVTL+APSKYP    D AFS+ LESVRKDVECF
Sbjct:  292 HIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECF 447
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 5.360e-51
Identity = 81/133 (60.90%), Postives = 103/133 (77.44%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+ WGMCP+   RS+TGKEG+PT+A++VTVDH    + VT GFTG+TNDK+I+RYD  V  IR + +Y ++E+ + +ADGT +  KGCYL+VDNGYH+  WVTL+ PSKYP D  D AFSK LESVRKDVECF
Sbjct:  237 HIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK--WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECF 367
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.030e-49
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 3 
Query:  249 MCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            MCP+   RS+TGKEG+PT+A++VTVDH    + VT GFTG+TNDK+I+RYD  V  IR + +Y ++E+ + +ADGT +  KGCYL+VDNGYH+  WVTL+ PSKYP D  D AFSK LESVRKDVECF
Sbjct:    1 MCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK--WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECF 126
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.430e-49
Identity = 82/133 (61.65%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+ WGMCP+   R +TGKEG PT+AF+VTVDH+G  + VT+GFTGATNDKTI+RYD  V  IR + VY +++YKL   DG  F  KGCYL+VDNGYH+  W TL+ PSK P D GD  FSK LES RKDVEC+
Sbjct:  162 HIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK--WRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 292
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.580e-48
Identity = 82/133 (61.65%), Postives = 99/133 (74.44%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+ WGMCP+   R +TGKEG PT+AF+VTVDH+G  + VT+GFTGATNDKTI+RYD  V  IR + VY +++YKL   DG  F  KGCYL+VDNGYH+  W TL+ PSK P D GD  FSK LES RKDVEC+
Sbjct:  253 HIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK--WRTLIPPSKCPIDRGDLIFSKRLESARKDVECY 383
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 3.350e-48
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+ W  CP+   RS+TGKEGFPT+ ++VTVDHAG AI VT+GFTG+TNDKT V +DA V+ IR +K Y ++ + +   DGT  T KGCY++VDNGYH+  W  L+ PSKYP    D  FSK LESVRKDVECF
Sbjct:   39 HIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHK--WQILIEPSKYPLSENDLLFSKRLESVRKDVECF 169
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BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.430e-47
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMSWVTLMAPSKYPGDVGDAAFSKMLESVRKDVECF 632
            H+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAG A+ VT GF G TNDKT +RYD+ V  IR    Y +REYKLRK +GT  TR+GC+LIVDNGY+E +               D AFS+ LESVRKDVECF
Sbjct:  211 HIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESN--------------EDTAFSRHLESVRKDVECF 329
[Close]
BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.220e-47
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:  234 HVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGSAIGVTQGFTGATNDKTIVRYDAVVQTIRYNKVYEDREYKLRKADGTGFTRKGCYLIVDNGYHEMS 533
            H+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAG AI +T GFTGATNDKTI+RYDA V  I+ +  Y  R YKLR+ADGT   RKGCYLIVDNGYHE++
Sbjct:   20 HIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVN 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1404.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K796_9PHAE6.270e-5870.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE2.470e-5771.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE2.390e-5362.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE5.360e-5160.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.030e-4960.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE2.430e-4961.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.580e-4861.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.350e-4858.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSI7_9PHAE2.430e-4762.41DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JG32_9PHAE3.220e-4773.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1404contigP-littoralis_Contig1404:14162..15487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size762
Hectar predicted targeting categoryother localisation
Exons2
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.001955-UTR-P-littoralis_Contig1404:14161..143901680789659.001955-UTR-P-littoralis_Contig1404:14161..14390Pylaiella littoralis U1_48UTRP-littoralis_Contig1404 14162..14390 -
1680789659.0141125-UTR-P-littoralis_Contig1404:14954..149831680789659.0141125-UTR-P-littoralis_Contig1404:14954..14983Pylaiella littoralis U1_48UTRP-littoralis_Contig1404 14955..14983 -
1680789659.0343745-UTR-P-littoralis_Contig1404:15418..154871680789659.0343745-UTR-P-littoralis_Contig1404:15418..15487Pylaiella littoralis U1_48UTRP-littoralis_Contig1404 15419..15487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.0262427-CDS-P-littoralis_Contig1404:14983..154181680789659.0262427-CDS-P-littoralis_Contig1404:14983..15418Pylaiella littoralis U1_48CDSP-littoralis_Contig1404 14984..15418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1404.2.1prot_P-littoralis_Contig1404.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1404 14984..15418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1404.2.1

>prot_P-littoralis_Contig1404.2.1 ID=prot_P-littoralis_Contig1404.2.1|Name=mRNA_P-littoralis_Contig1404.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MSKSMAAATFHKFCKNFAKKMFEEHIYLPTGTYQDEVMDCYRKLGFTGAI
GSTDVTSAGACVRSPLAVLSRARRGFQPWRSRLPSTTRGAPLASPKGSPV
RPTTRRSSATTQLYRPSGTTKCTRIESTSSGRRMARGSPGKDVI*
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mRNA from alignment at P-littoralis_Contig1404:14162..15487-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1404.2.1 ID=mRNA_P-littoralis_Contig1404.2.1|Name=mRNA_P-littoralis_Contig1404.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1326bp|location=Sequence derived from alignment at P-littoralis_Contig1404:14162..15487- (Pylaiella littoralis U1_48)
CAGATCTTGACGGCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGGCGA
CATCAACCAGCTGTCGTTAATGAGCAAATCGATGGCGGCAGCAACGTTCC
ACAAGTTCTGCAAGAACTTCGCGAAGAAGATGTTCGAGGAGCATATCTAC
CTTCCAACAGGAACGTACCAAGACGAAGTGATGGACTGCTACCGTAAACT
GGGTTTTACTGGAGCAATCGGTTCTACCGACGTCACGTCGGCTGGGGCAT
GTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAA
CCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGGAGCGCCATTGGCGTC
ACCCAAGGGTTCACCGGTGCGACCAACGACAAGACGATCGTCCGCTACGA
CGCAGTTGTACAGACCATCAGGTACAACAAAGTGTACGAGGATCGAGAGT
ACAAGCTCAGGAAGGCGGATGGCACGGGGTTCACCCGGAAAGGATGTTAT
TTGATCGTCGACAACGGCTATCACGAGATGAGTGTATTGGGGGCGTGGGG
GGTATTAGAATATCCGAAGGTAGATCGTGCTCCGTAACGCTTCGGGTTGA
TGTGAAGCCCGAAAAAAACACGCCGGTACACCGAAAGCAGACCAATGCCA
TATTTGTCGGTACTGAATGAGGATCTTTATGGCATGTCGGCCCCGTGCAT
CGGGCGTCGACCTTACGCAGCGGCACGCCAAGGTAAAAAACGGTTTGCAC
CTTCGCGTTCCTTCTATTCGTAATTATTTTTGTGCTGGTTCCGTTTGACG
GTTGCGTTCACTTTCTGACATTTCGAGCAAACATTACCCCATTTATAACA
CCAAAGGTTTTAAAAAACAAATCTGCTCAGGGGTGGTCAGACGGCAAGTA
ATATTGTACTTCGAAGTACAAAGTTGTAGGCATCTGTGTTGTCCACATGT
CCACATGGTTCCTCGTTCCCCCGAGGAGTTTGACCGTGAAAATATGTGCG
TCGGGGCCTGAGGTTTCCAGAGCCTTTCGGTAGCTCAACAGTCGTCCCTT
TCGATCCCCCCCTGCTACTGTTGTGCCGTCGTGTGCCAAATCAACAGTGG
GTCACCCTCATGGCCCCATCGAAGTACCCGGGTGACGTGGGTGACGCGGC
CTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTTTCCTTC
GGCATTCTGAAAGGACACTTCGGAATCCTGAAGCTCCGCCTGGCCTACCA
CTGCAGGGAAGGCATCGATAACATCCTCTGTACGTGCTGTATTTTCCACA
ACATGCTCCACTCCTTCGACGGCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1404:14162..15487-

>mRNA_P-littoralis_Contig1404.2.1 ID=mRNA_P-littoralis_Contig1404.2.1|Name=mRNA_P-littoralis_Contig1404.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig1404:14162..15487- (Pylaiella littoralis U1_48)
ATGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTTCTGCAAGAACTT
CGCGAAGAAGATGTTCGAGGAGCATATCTACCTTCCAACAGGAACGTACC
AAGACGAAGTGATGGACTGCTACCGTAAACTGGGTTTTACTGGAGCAATC
GGTTCTACCGACGTCACGTCGGCTGGGGCATGTGTCCGTTCACCCTTGGC
CGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTAC
CGTCGACCACGCGGGGAGCGCCATTGGCGTCACCCAAGGGTTCACCGGTG
CGACCAACGACAAGACGATCGTCCGCTACGACGCAGTTGTACAGACCATC
AGGTACAACAAAGTGTACGAGGATCGAGAGTACAAGCTCAGGAAGGCGGA
TGGCACGGGGTTCACCCGGAAAGGATGTTATTTGA
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