mRNA_P-littoralis_Contig140.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.63.1
Unique NamemRNA_P-littoralis_Contig140.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig140.63.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 4.350e-181
Identity = 302/536 (56.34%), Postives = 362/536 (67.54%), Query Frame = 1 
Query:    1 MGGFPGRRSVEGRGIAAEIGGMTWKERQRNRLPLVDLDDNPFCVERRTSDEWRIMQLHKASTTNPSLGQLTSADVPRTASFMVDTEKPFRDFSRKKRNLLAWSLRSASASNVAPHGESSRRSKPMKETDRTVSCGPEVIDADDFFNQQPKASS---HPSQADRAAVDIDTLPNLEPYRREVIAQQPITFGHRPLSASRMFNPCTMATSCGIPSGGEHNPSSSGISGRKGGTKIARRGTSRSQRQSLPKRLMRSKNRRATGLSAPMLKALLKRDPPTGGGAVAAAVVATASDHVKTQPDHFHPRSIDIFQDWTTEAAYMALNGREDLSDCSLNSNHLEKSVWRPIDPAGGGMR-GDLKATWLTNSSLGGLQQGSGRLGGSTEELELRRIFSDARPPWDGTPAPLPAPRNVRRAISSLLMPDPDETLRDKLVKSRKLAAGIPVTASSTKDEKEKELRPFTSTPSGRWEVCPATPRAVIAREEIKKLAGARHERDRAMERRVRQAELGVFFNKISPSEELYRSTLQEAQARFQRQGVAA 1596
            M G    RS+EG+  A     MTWK+RQR R+P+VDLDDNPFCVERRT++EW +MQL+K                           KPFR+FSRKKRNLLAWS+R+ASAS+ A    +++   P +    TV    +  D  +FFN +   S    HP+  DR  VD+DTLP LEPYRREV+AQQPITFGHRPLSASRMFNPCTMATSCGIPS G H+PS+ GI GRK       +G           R   SK RR TGLSAPMLKALL+ D PTG G    A + TAS H   Q + F P    + +D   +  Y+ L+G+EDL+D S+NS  L++S WR +D  G G   G+L++ WL  SS  GL  G  RLG + E  EL RIFS  RPPWDG PAPLPAP++ RRAISSLLMPDPDE LRDKL+KSRK AAG+PVTASSTKDE+E+ELRPF  TP GRWEVCPATPRAVIAR+EI++L+  R ERDRAM ++VRQAEL V F KI+PSE+LYR+TLQ AQ RF+ QG AA
Sbjct:    1 MVGIAAGRSLEGQNAARLA--MTWKDRQRTRVPVVDLDDNPFCVERRTNEEWHMMQLNK---------------------------KPFREFSRKKRNLLAWSIRAASASDAAAQSTANKTHMPTRRLSTTVRSDLDGTDIGEFFNMERGMSGRVLHPT--DRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMFNPCTMATSCGIPSDG-HHPSTGGIRGRK-------KGGGGHXXXXXXXRGRNSKPRRTTGLSAPMLKALLRGDTPTGEGG---AALVTASQH---QQELFEPNGNIVSRDSAPKPNYLVLDGQEDLTDSSVNSEKLDESKWRSVDDLGRGEALGELES-WLQTSSHSGLGHGRRRLGNTKEGQELHRIFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFNPTPIGRWEVCPATPRAVIARQEIRRLSELREERDRAMAKKVRQAELSVLFKKIAPSEKLYRNTLQIAQERFRHQGTAA 490
[Close]
BLAST of mRNA_P-littoralis_Contig140.63.1 vs. uniprot
Match: A0A8K1C8G0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8G0_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 2.630e-5
Identity = 55/186 (29.57%), Postives = 79/186 (42.47%), Query Frame = 1 
Query:   79 RQRNRLPLVDLDDNPFCVERRTSDEWRIMQLHKASTTNPSLGQLTSADVP--------RTASFMVDTEKPFRDFSRKKRNLLAWSLRSASASNVAPHGESSRRSKPMKETDRTVSCGPEVIDADDF-FNQQPKASSHPSQADRAAVDIDT--LPNLEPYRREVIAQQPITFGHRPLSASRMFNPCT 603
            ++R R+P VD+D NPFCVER+ +DE+ +   +K    NP     T    P          +SF+ D            R    ++  SA + +           KPM          P VI  D       PK  +HP   ++ AV + +   P    Y       QP++FGHRP SASRM++P T
Sbjct:   31 KKRVRVPRVDVDANPFCVERQLADEYALHNFNK----NPRFYLNTIKQSPPRIEKNPHNHSSFINDAADMMASSGFSPRIRAEFTTPSAPSVSY----------KPMDYV------APSVISVDPSDLRSIPK--NHPLSPEKNAVHVVSKFTPPTHAYYGSHKTTQPVSFGHRPDSASRMYDPLT 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2S4_9PHAE4.350e-18156.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1C8G0_PYTOL2.630e-529.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:281344..285218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008868131.1
Model size1602
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue0.000272
EggNOG OGs2E0N9@1|root,2S82D@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000180.1
Cds size1602
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.63.1prot_P-littoralis_Contig140.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 281344..285218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789656.7165635-CDS-P-littoralis_Contig140:281343..2815321680789656.7165635-CDS-P-littoralis_Contig140:281343..281532Pylaiella littoralis U1_48CDSP-littoralis_Contig140 281344..281532 +
1680789656.7274709-CDS-P-littoralis_Contig140:282064..2821331680789656.7274709-CDS-P-littoralis_Contig140:282064..282133Pylaiella littoralis U1_48CDSP-littoralis_Contig140 282065..282133 +
1680789656.7365994-CDS-P-littoralis_Contig140:282772..2836781680789656.7365994-CDS-P-littoralis_Contig140:282772..283678Pylaiella littoralis U1_48CDSP-littoralis_Contig140 282773..283678 +
1680789656.7538476-CDS-P-littoralis_Contig140:284228..2843991680789656.7538476-CDS-P-littoralis_Contig140:284228..284399Pylaiella littoralis U1_48CDSP-littoralis_Contig140 284229..284399 +
1680789656.766476-CDS-P-littoralis_Contig140:284621..2847881680789656.766476-CDS-P-littoralis_Contig140:284621..284788Pylaiella littoralis U1_48CDSP-littoralis_Contig140 284622..284788 +
1680789656.7774506-CDS-P-littoralis_Contig140:285118..2852181680789656.7774506-CDS-P-littoralis_Contig140:285118..285218Pylaiella littoralis U1_48CDSP-littoralis_Contig140 285119..285218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.63.1

>prot_P-littoralis_Contig140.63.1 ID=prot_P-littoralis_Contig140.63.1|Name=mRNA_P-littoralis_Contig140.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=534bp
MGGFPGRRSVEGRGIAAEIGGMTWKERQRNRLPLVDLDDNPFCVERRTSD
EWRIMQLHKASTTNPSLGQLTSADVPRTASFMVDTEKPFRDFSRKKRNLL
AWSLRSASASNVAPHGESSRRSKPMKETDRTVSCGPEVIDADDFFNQQPK
ASSHPSQADRAAVDIDTLPNLEPYRREVIAQQPITFGHRPLSASRMFNPC
TMATSCGIPSGGEHNPSSSGISGRKGGTKIARRGTSRSQRQSLPKRLMRS
KNRRATGLSAPMLKALLKRDPPTGGGAVAAAVVATASDHVKTQPDHFHPR
SIDIFQDWTTEAAYMALNGREDLSDCSLNSNHLEKSVWRPIDPAGGGMRG
DLKATWLTNSSLGGLQQGSGRLGGSTEELELRRIFSDARPPWDGTPAPLP
APRNVRRAISSLLMPDPDETLRDKLVKSRKLAAGIPVTASSTKDEKEKEL
RPFTSTPSGRWEVCPATPRAVIAREEIKKLAGARHERDRAMERRVRQAEL
GVFFNKISPSEELYRSTLQEAQARFQRQGVAAA*
back to top

mRNA from alignment at P-littoralis_Contig140:281344..285218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.63.1 ID=mRNA_P-littoralis_Contig140.63.1|Name=mRNA_P-littoralis_Contig140.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3875bp|location=Sequence derived from alignment at P-littoralis_Contig140:281344..285218+ (Pylaiella littoralis U1_48)
ATGGGAGGATTTCCGGGACGTCGCTCTGTAGAGGGACGAGGTATTGCTGC
CGAGATAGGAGGAATGACGTGGAAAGAGCGCCAACGGAACCGACTCCCTC
TCGTCGATCTCGATGACAACCCATTCTGCGTCGAGCGGCGTACGAGCGAC
GAATGGCGCATAATGCAGCTTCACAAGGCAAGTACAACAGTATACAATAT
AGCCCAGTACATTGACTGCTGCGTTGCCGAGAGTTGAATGAATCATTCCA
AAGCTGTTCTCCTTCTGTCGTTCGATGTTGCCCTCACACATGATGTAACC
AAGTACAGTAATGCTTTCGTGACTACAAACAGTCGGTCGAGCATGGCCCT
ATTTATGAAACAGTTGAACAAACCTTGGGTGGTACTGTTCTATCATCAGC
TGCAAGTGCTGTTCATGAAGTGCTGCACCAACTGGCTGGTGTAAGAATGA
CTGATTGTGCGCGCACCTGACTTATGCGACGGTGCGCGCCCGTGCGGCTG
CATTGCACATAATACGTACTGCAGTTGTATGATATGATAGTTGGACAAGA
AATACACCTACAGCTGGTAACCTGTACCATGTTGTTGTTGTTGTTGTTGA
TTCTCACATTAGCTCATCGCCAAAATCTAGCCCGTTGTCACATGTATTAC
TCACTGACTGTGCATCGCAAAAACGTGTTGGACTGCACATTCGCTGGCTC
GCCTTAAATTGTTGTGTGCAGAATCCATCGCTGGGTCAATTGACATCGGC
GGACGTCCCGCGAACGGCCTCGTTCATGGTCGACACTGAGGTGATGAGAA
ATAACCCCAAGGCCCAAATTACACACCATATGCCGGTGAAATGCGCATAC
TTTACGTTGAGTTCACACGTTTTTGGCCCAACATTGTATAGTACGTAGCA
TGCGGAGTTTGGCAGCGGGGCGTTACTGAAAGTATGTGCCGATGCCCTGC
CTTCAGTTTGTCGTATGTGCTGGCTTTGGTGCTATATTTGTGCGTTCAAC
ACGAAGATTTTCAGTTCCAACAACGTTCAACCAAATTGGCTGGTCTCATG
GGTTGCGCATACCTAGCAGTACGGCTTGCCACGCGTACCGGCCTATTCCA
ATATCTTTTTACTGTAAATACACATCTGATCAGCTTGATTGCACGGTGTT
TTGGAAGGTGTGAAATTTCTTTTCCACACGCACGACCGATACGATAACCC
TCCGTTGTACCTGCCCGTATGGTGTAAGATTATCCTCCACTTGCAGCTCG
CCAAGACTCACACGTGAACAAGGCGTCCCTAAAGGAGCAAGTCTCCGTCT
GACATGACTTCCCTGTTTGCCAAAACTGACACTCACGACGCCATGGACGA
GCGAAAATTAGACCATCAGGCCCATCAAATGAAACCCGCGCCTGTGCACA
TCCCCCGCATCTGTGCATCACCCTCGCAGAAACCTTTCCGGGATTTCTCC
CGGAAGAAGCGCAATTTGTTGGCCTGGTCTCTCCGATCGGCCTCTGCATC
AAATGTAGCACCCCACGGGGAATCAAGCCGCAGATCCAAACCAATGAAAG
AAACGGACAGGACGGTTTCGTGCGGTCCAGAAGTCATCGATGCAGACGAT
TTTTTCAATCAGCAGCCGAAGGCGTCAAGCCATCCTAGCCAAGCCGACCG
CGCGGCCGTTGACATCGACACCTTGCCGAACCTGGAGCCTTACCGTCGAG
AAGTGATTGCGCAACAGCCCATCACGTTTGGACACAGGCCGTTGTCAGCG
TCGCGTATGTTTAACCCCTGCACGATGGCGACATCGTGTGGCATTCCGAG
CGGTGGCGAACACAATCCTAGCAGCAGCGGTATCAGTGGAAGAAAGGGTG
GGACGAAAATCGCGAGGAGAGGCACATCTAGATCGCAACGGCAGTCTCTT
CCGAAGAGGTTGATGAGGAGCAAAAACCGTCGGGCCACCGGGCTTAGCGC
ACCTATGCTCAAGGCGCTGTTGAAGAGGGACCCTCCAACGGGCGGAGGGG
CGGTAGCAGCAGCAGTGGTGGCCACAGCGTCCGACCACGTCAAAACCCAG
CCGGATCATTTCCACCCGAGAAGTATCGATATTTTCCAAGACTGGACGAC
TGAGGCGGCGTACATGGCCCTCAACGGACGAGAGGATTTGAGCGACTGTT
CTCTAAACAGTAACCACTTGGAAAAGAGTGTGTGGCGACCGATCGATCCG
GCCGGTGGGGGGATGCGCGGAGATTTGAAAGCTACGTGGTTGACAAACTC
GAGCCTGGGGGGACTGCAGCAAGGGTCGGGGCGGTTGGGTGGCTCGACAG
AAGAGCTGGAGCTGCGGCGAATATTCTCCGACGCGGTAAAAACTCGCGAA
TCGTCTCATGCAGGCAGATGGTGGAAAATGTTGCTTTTATAATGGTGTTC
CGCGTTCATACTTCGTATCAGTTTACCGTGCATAGCATGGCCTACCGCGC
CATGAGTGCCTGTTGAATTGTCATGATAACCTTTCACCGAAACGCTGTCT
ATCGATCATTTTCGAATGTAACTTCAAAAGGTTGTCGTTTATTCCGCCAC
TTCCATAAATTCATAGACGTGTAATCAAGCCAAAGCAAGAGGGTGGCCGG
CTTCCGTCTATCATCACATGGTCACCCATGGGCTCCGCCATGCGTATTTG
GTACCAATAATCGATATCCATACTACCGAGCAAACACGATGGACGCACAC
GAATTTTTCCGGAGGAAGTAGACGGACTACATGCGCGTTTCGTCGTCGCC
CTTTGTCTCCCAGTGTTTTATGTCCTTTCGCTTCCCATGCTCATATTTTC
TACAAGTATGCTCTTGGGCAACCTCTGTACTCTCTACACCTTTGTCAAAC
ACCGTTCGACACAATTTGCCGTCGAATGAATGCAGCGACCGCCGTGGGAT
GGAACTCCAGCGCCTTTACCCGCTCCGCGAAACGTCAGACGCGCCATCAG
TTCGCTCTTGATGCCCGACCCGGATGAAACTCTTCGGGATAAGCTCGTGA
AGTCTAGGAAGCTCGCTGCAGGCATACCAGTCACCGCCTCGAGCACGAAA
GACGAGGTGGGCGTGAAAAGTAGCTTCAGGCGACGTGGCTGGATGCCCAA
GCGCACCACGTCTCAGCTGATACGTGTCTGTCAGCCAACGAACATGGTGC
TGTAGACTACACCTTCCTCCAAATTTTCAGGTGTACCCCCAGTAGACTTC
AAACGTGCAGGGTAACCCCCCCCCCCCCCAACACCTCCCCAATACACATA
AACGCCCGTGCTCGCTCGTTGTGCCCAGAAAGAAAAAGAGCTGCGGCCTT
TCACTAGCACGCCCTCCGGGCGATGGGAGGTGTGCCCTGCGACTCCGCGT
GCGGTGATCGCCCGTGAAGAGATTAAGAAGCTGGCGGGGGCGCGGCACGA
GCGGGATAGGGCGATGGAAAGACGAGTCCGGCAAGCTGAATTAGGGTGCG
TTTCTCACATAGCACCCCGCTCGCGCACATGGAGAACAGAGAATTTCGTC
CCACGGGGTCCTTGGTTTTTTACACGTCGGTCATCGGTAGTGCCGAAGGG
AAAAATAAACGTTTCGGGCGTAACGCCACTTATTGCAAAGTCCGCCTCGT
ACGTTTCGGGTGTTCCTCCATTCGTCGCAAAGTCCGCCTCGGGGATGACC
CGAAGCATAAAGTGAGCTAACCCAGAATGGCTGGCCGCCAAGCGGAGCTC
CTCGCATTGCTTAGTTTCCTTATTTTTTCAATGCGCTCGCTACGATATGC
CCGACACATGCCTCTACACATGCAGCGTGTTCTTCAACAAAATCTCCCCG
TCGGAGGAATTATACCGCAGCACGCTTCAAGAAGCCCAAGCAAGATTTCA
GCGCCAAGGAGTCGCAGCGGCCTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig140:281344..285218+

>mRNA_P-littoralis_Contig140.63.1 ID=mRNA_P-littoralis_Contig140.63.1|Name=mRNA_P-littoralis_Contig140.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1602bp|location=Sequence derived from alignment at P-littoralis_Contig140:281344..285218+ (Pylaiella littoralis U1_48)
ATGGGAGGATTTCCGGGACGTCGCTCTGTAGAGGGACGAGGTATTGCTGC
CGAGATAGGAGGAATGACGTGGAAAGAGCGCCAACGGAACCGACTCCCTC
TCGTCGATCTCGATGACAACCCATTCTGCGTCGAGCGGCGTACGAGCGAC
GAATGGCGCATAATGCAGCTTCACAAGGCAAGTACAACAAATCCATCGCT
GGGTCAATTGACATCGGCGGACGTCCCGCGAACGGCCTCGTTCATGGTCG
ACACTGAGAAACCTTTCCGGGATTTCTCCCGGAAGAAGCGCAATTTGTTG
GCCTGGTCTCTCCGATCGGCCTCTGCATCAAATGTAGCACCCCACGGGGA
ATCAAGCCGCAGATCCAAACCAATGAAAGAAACGGACAGGACGGTTTCGT
GCGGTCCAGAAGTCATCGATGCAGACGATTTTTTCAATCAGCAGCCGAAG
GCGTCAAGCCATCCTAGCCAAGCCGACCGCGCGGCCGTTGACATCGACAC
CTTGCCGAACCTGGAGCCTTACCGTCGAGAAGTGATTGCGCAACAGCCCA
TCACGTTTGGACACAGGCCGTTGTCAGCGTCGCGTATGTTTAACCCCTGC
ACGATGGCGACATCGTGTGGCATTCCGAGCGGTGGCGAACACAATCCTAG
CAGCAGCGGTATCAGTGGAAGAAAGGGTGGGACGAAAATCGCGAGGAGAG
GCACATCTAGATCGCAACGGCAGTCTCTTCCGAAGAGGTTGATGAGGAGC
AAAAACCGTCGGGCCACCGGGCTTAGCGCACCTATGCTCAAGGCGCTGTT
GAAGAGGGACCCTCCAACGGGCGGAGGGGCGGTAGCAGCAGCAGTGGTGG
CCACAGCGTCCGACCACGTCAAAACCCAGCCGGATCATTTCCACCCGAGA
AGTATCGATATTTTCCAAGACTGGACGACTGAGGCGGCGTACATGGCCCT
CAACGGACGAGAGGATTTGAGCGACTGTTCTCTAAACAGTAACCACTTGG
AAAAGAGTGTGTGGCGACCGATCGATCCGGCCGGTGGGGGGATGCGCGGA
GATTTGAAAGCTACGTGGTTGACAAACTCGAGCCTGGGGGGACTGCAGCA
AGGGTCGGGGCGGTTGGGTGGCTCGACAGAAGAGCTGGAGCTGCGGCGAA
TATTCTCCGACGCGCGACCGCCGTGGGATGGAACTCCAGCGCCTTTACCC
GCTCCGCGAAACGTCAGACGCGCCATCAGTTCGCTCTTGATGCCCGACCC
GGATGAAACTCTTCGGGATAAGCTCGTGAAGTCTAGGAAGCTCGCTGCAG
GCATACCAGTCACCGCCTCGAGCACGAAAGACGAGAAAGAAAAAGAGCTG
CGGCCTTTCACTAGCACGCCCTCCGGGCGATGGGAGGTGTGCCCTGCGAC
TCCGCGTGCGGTGATCGCCCGTGAAGAGATTAAGAAGCTGGCGGGGGCGC
GGCACGAGCGGGATAGGGCGATGGAAAGACGAGTCCGGCAAGCTGAATTA
GGCGTGTTCTTCAACAAAATCTCCCCGTCGGAGGAATTATACCGCAGCAC
GCTTCAAGAAGCCCAAGCAAGATTTCAGCGCCAAGGAGTCGCAGCGGCCT
AG
back to top