mRNA_P-littoralis_Contig140.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.51.1
Unique NamemRNA_P-littoralis_Contig140.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.780e-57
Identity = 83/99 (83.84%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 MAFRMTGRVLGALAKERNDVQPALRKVWKAHEHIDGLVIRSISPYQLNLVETWVRSVPKKLKTRFIEYGPEVLMSMGLIYGTYTSHKKGFAQLHKDHRD 297
            MAFRMTGRVLGA+A+ERNDVQPALRKVWKA+E +DGLVIRSISPYQLNLV  +V ++PKKLKTRFIEYGPEV+M +G++YGTYTSHKKGFAQLHKDHRD
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
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BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.400e-16
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MAFRMTGRVLGALAKERNDVQPALRKVWKAHEHIDGLVIR 120
            MAFRMTGRVLGA+A+ERNDVQPALRKVWKAHE +DGLV R
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
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BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Match: A0A6V1P0L7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0L7_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-13
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAL--------AKERNDVQPALRKVWKAHEHIDGLVIRSISPYQLNLVETWVRSVPKKLKTRFIEYGPEV---LMSMGLIYGTYTSHKKGFAQLHKD 288
            MA R T  V G +        A ERND+QP L+K WK    +DG+V +S+SP++  +V+ W++++P K+K + ++  P     L+ + +  G   S KK  +  H+D
Sbjct:    1 MALRRTLAVGGPVRRSFAAMFAAERNDIQPQLKKWWKGTPQMDGVVTQSLSPFEQQIVQPWIKTIPDKIKKKIVDDFPPTIPALIFVAITLGYCESEKKRLSMEHRD 107
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BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.070e-10
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   37 LAKERNDVQPALRKVWKAHEHIDGLVIRSISPYQLNLVETWVRSVPKKLKTRF----IEYGPEVLMSMGLIYGTYTSHKKGFAQLHKDHRD 297
            +A    +V P L K+WK ++ I+GLV R++SPYQ + +  WV++ P+K+K +      + GP VL+    ++GT       F    K HRD
Sbjct:    1 MAPPMKNVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLV----LFGTVAWADATFESEMKKHRD 87
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BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Match: A0A835ZEE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-6
Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:    1 MAFRMTGRVLGALAKERNDVQPALRKVWKAHEHIDGLVIRSISPYQLNLVETWVRSVPKKLKTRFIEYGPEVLMSMGLIYGT 246
            MAFR +     A  K   +V PAL K W  +  +DG V R +SP Q+ ++     + P K+  +   +GP V+ +  ++YGT
Sbjct:    1 MAFRRSTAAF-ATHKPGPEVHPALVKFWSKYSSVDGEVTRHLSPNQIRIMMPLYEAAPAKMARKMKNFGPYVVGTFLMVYGT 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE2.780e-5783.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI4.400e-1687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1P0L7_HETAK1.140e-1333.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GU00_9STRA2.070e-1035.16Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
A0A835ZEE9_9STRA1.360e-632.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:238324..242033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps23414
Model size300
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.11e-08
EggNOG OGs2BWBD@1|root,2RF6U@2759|Eukaryota,2XGN2@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
DescriptionUcrQ family
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789656.2748868-CDS-P-littoralis_Contig140:238323..2384431680789656.2748868-CDS-P-littoralis_Contig140:238323..238443Pylaiella littoralis U1_48CDSP-littoralis_Contig140 238324..238443 -
1680789656.2873669-CDS-P-littoralis_Contig140:239033..2391021680789656.2873669-CDS-P-littoralis_Contig140:239033..239102Pylaiella littoralis U1_48CDSP-littoralis_Contig140 239034..239102 -
1680789656.2988925-CDS-P-littoralis_Contig140:241922..2420331680789656.2988925-CDS-P-littoralis_Contig140:241922..242033Pylaiella littoralis U1_48CDSP-littoralis_Contig140 241923..242033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.51.1prot_P-littoralis_Contig140.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 238324..242033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.51.1

>prot_P-littoralis_Contig140.51.1 ID=prot_P-littoralis_Contig140.51.1|Name=mRNA_P-littoralis_Contig140.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MAFRMTGRVLGALAKERNDVQPALRKVWKAHEHIDGLVIRSISPYQLNLV
ETWVRSVPKKLKTRFIEYGPEVLMSMGLIYGTYTSHKKGFAQLHKDHRD*
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mRNA from alignment at P-littoralis_Contig140:238324..242033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.51.1 ID=mRNA_P-littoralis_Contig140.51.1|Name=mRNA_P-littoralis_Contig140.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3710bp|location=Sequence derived from alignment at P-littoralis_Contig140:238324..242033- (Pylaiella littoralis U1_48)
ATGGCGTTCCGTATGACCGGCCGCGTTCTTGGGGCACTCGCGAAGGAGAG
GAACGACGTACAGCCGGCGCTCAGGAAGGTTTGGAAGGCTCACGAGCACA
TCGATGGACTGGTGAGAAATGCACATAGCATCGGCACTGCTCTCACACAA
ACGCAAGTCTTTGCGAAGAGGCCCCTGCGCTTCCGTTGGCGAGTCTTCAA
AGGACGTGGTCGGAGGGTGTGATTGTTTAGGGGGGGGGAGGCCTACGCCC
CATTGGGACGCCGTTGCCTGCGTCTACGCACTCGCACCTGTGAGGTCGGC
TCTCGGAAGCTCACACTTGGTACTTTGACGAAAGTCATGTGCTACCTGGT
ACTTGTATATGGTACAAGTATGCATCGCTAGAAAGGTTAAAGGAATTGAG
AAGCACAGTGTGCGTTGGAGGGCCGCTTCTCAAATAACTGCGTGAAGCCG
TGTGCGTTACTGTTTGGTGGCGTATGATATGCCTGGTGCTTGACAGCAGT
GCTGCTGCTGCAGGAAAGCTGTGGTGGTGTGCTGGTGTGGGTGTGCGCCA
GCACATCGAACACAAAACGCCTCTCGTCATTTTTCACAAAAAAGGGACCC
CAAAAATAGCGCGCTGCTGACAAGATAGCTGTGCGCACAGGACAAGGGCT
GCGATGGACCCAGCAGCAGGGTAGATGCTATTTACCTCTTCAGTTCAAGC
CCTTGGTCGTAGCGATCTGTGCTGAACTGGTGTCAAAGTGTTGAAAAATG
TGGCCATATTCTCGGACACACACACAAACACACACACACCCACACACACA
CACAAAGACACCGAAAACCTCCAAAATTTGATGAAGGCTCTCCCCATATG
GCAGAGATTTAATTAATTTATTTTTATTCGCACATACACTCACACCTGCA
CATCACGACAAGTCAGTATGAATTCGAAGCAGTTCGACAAGGAACTTACA
CTTCGCTTCGCTCGTGGCCTGCTTCTCAATATCATACAAGTTCTTCTACA
GGAGACAGCAGACCTGCTTTTGCACCCTTTTTTTTTTTTTGTGAAATCTT
TCGCTACCCTTGAAAACGACACACAGCAGTCACGAAAAATGGAGTCGACC
AAGTCGACCATTCTCTCGACAACACCAACACCACTGCAACACGCCACAGC
AGTGCTGTCTCTTTATCTCAAAGTACGCTCCACTCAGCGACCTTTGCCAC
AAGCGTTTGAGAGATTGAGTGCCCAGGCGTGTACCGTTATTCGCATCTGT
TGCACCATTTCGGGAGTTAACCCTCTCGTCCGAAACTCACATCATTCGAA
GTCACGAAGCCTCTCTTTGCCTTCGGGCCTACCGTATGCAGTATGCTCTG
ACATGATACGATAATACTTCGAGTACGAGTGATGAAAATACTCACCGGCG
ACGCGCTGAGACTTCAGCAGTACTGCTTGTAATGCTGGCTATTTATTGGC
TTGTCGTTTCATTTTCGCCGAGTTTTGAACAACACACACACCCCCACGTA
ACGTGTGGGACACACCCACGTACCGTGTGGGACGTTAGATAACACCCCCC
GCCCGCGGTTCGCTGACTTGGCGGTTTCATAATTCATGCCGACGCCGGGT
GTTCCAAACTAAGAGCCTACTGCTGTACCACCCGTACAATGCCAGGATAA
AGTAAAATTCCTGGGCTGCGATACGATAGAGCTGTGCTAACACGCGACAC
TCCTACGTAGCTTAGCTTGGTTGCAATTTTGATGCGGCTTGGACCGCTTT
CCGCGTTTCGCTCATGATTCGCTAGTGGCTGTAGCAACAGCGGTTGAGAC
TCACCCGCCTCTAACCGGATTTCGTGGTGGAAAGATACGAAGGGTAGTAG
TTTACCCATAATACCAACCTCCGCTGTAGGCCTCACAATGAACCCCACAG
GTCGATGTGCGGCAACTGCGCTTTTGTTCAGTCCCAGCTCCCGTTCTTGG
GTTCGAGCAAGCTTGCAGATCATGACTGAAGTGCAAGTCGGACGAGGACC
CATGAAGTCGGTTTTGCCTGAGGAGCCGTATTTATGCCCATGTCGTTTGA
TGCCATATCATACCCCCGAGCAAACTCGCTGTGTGTACCACGAACCAGTT
TTGTTTCCCGCAGCCAGCCCATCGATGTGATTCTGCCAGTTGTAGCAGTA
TTCCACACGCCAGTGCCTGCCTACACCTGTTGACGTCTTCTCTTCTCGTC
CCACCCAGCAGTAGATAAGACGTATATTTATTTAGGGTTGATCAACGTCG
GTTTGCCTTTCGCTGCCCTTTCACCGAAAACTGCCGCTGTATCCTTCAAC
AGGAGTTCGTTTAAGCCTCGGTTGTCCCACAGTAGCAGACGAAACCCTTA
CCGAGCGGGAGTGGCATTTTCTTCTTTTGAAGCGCCGCCAACGTGTTGCC
CTTTGCGCACTTCGTGTGAATGTCTTTTCGTGTTTCATTTGTCACACGGG
TTTTCACGATTTGACCCCTCTGTCTTTCGTGGGTGAGAGAGTTAGCGCCC
CACACTTTACTGATAGGACCGGTCCTACTTGACTGCACGGCGAAGTGCCA
CCACAGCAGTGGGGTCTGTTCATATGTTTCTGCACCCGGACCTCCAGTAC
TTTTGAGCGACGAATTGCTGCTGCTACTTCTGTGTCACTGCTGCTGTCAC
TCCTTAAATACCCGTCGGGCAGATTTAAGTCCAATATTGCTCCCACACGT
TCGGCTTGCTGTGACCACAAAGCACGTCGCACCCACCATACGTGCGTGCC
GCGCCGTCAGCGGGGCAGTAGTTTTTATCGACGCGACCCCTACAAGTGTA
TATATTTACCATAGGGTGTTGGTTCCGAAAACCTCGTGACTACTGCTGTC
ACATCACTGCTGTGACTTTTTTTTTTTTTTTCTCTTGTGAGTGATATCAT
TATGTACATGCTGCTGTATTGTCGATTTCAGGTCATCCGGTCAATTTCTC
CTTACCAGCTCAACTTGGTGGAGACCTGGGTGAGGTCTGTCCCGAAGAAG
GTGAGATGACAGGCCTGTGCTCTCCTCTATTCTGGTACGTTCGACGTCTA
TGCCGACATTTCATATGAAGGGAGTGGTTTTACTGAGGTGTGCGGGCGGA
GGGACTCTTGCGTGGTGCAACAGGCAAGCTTCTTTTCCCGCGTTGCAACG
CGTGTGTATTCCTCTTCCACACGGCGCTGACGGATGAATGGCGACATCAC
ACCGGCAACGATGTGCACACTACAAGTAGGCTGACGTCATGCACCACGTA
CATTTATTGCATGAGTCGAATGTGTTTGGTGTCTCTCGTTACATCGCCTA
TTGTATGTAGCGAGGATGGATGTTCCTGTTGTGACGCTGCCCAGTTTGTG
TGCACCACCACGTTGAAGGAGTACTGCTGTGTATCTTGATGGGCGAAATG
TTTCGTACGCAGCAGCATGCAGCAGCTGCATTGGCTTGGCCTCCACTCGG
CAGAATCCTCTGTGCATCGCGTAGAAAATCTCGCGAGAAAGTGTTCTGCA
GGTATCATGGTTCGTTTACTGGAGCAATTAATTTGATGTTGAAAACCTTC
GTCCCGCCCTTTCCTTTCCTTGCGCGCTTGAACTCAACAGTTGAAGACTC
GCTTTATCGAGTATGGCCCCGAGGTGTTAATGTCCATGGGACTCATTTAC
GGGACTTACACAAGCCACAAGAAGGGTTTCGCCCAGCTCCACAAGGACCA
CCGTGACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:238324..242033-

>mRNA_P-littoralis_Contig140.51.1 ID=mRNA_P-littoralis_Contig140.51.1|Name=mRNA_P-littoralis_Contig140.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig140:238324..242033- (Pylaiella littoralis U1_48)
ATGGCGTTCCGTATGACCGGCCGCGTTCTTGGGGCACTCGCGAAGGAGAG
GAACGACGTACAGCCGGCGCTCAGGAAGGTTTGGAAGGCTCACGAGCACA
TCGATGGACTGGTCATCCGGTCAATTTCTCCTTACCAGCTCAACTTGGTG
GAGACCTGGGTGAGGTCTGTCCCGAAGAAGTTGAAGACTCGCTTTATCGA
GTATGGCCCCGAGGTGTTAATGTCCATGGGACTCATTTACGGGACTTACA
CAAGCCACAAGAAGGGTTTCGCCCAGCTCCACAAGGACCACCGTGACTAG
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