mRNA_P-littoralis_Contig140.36.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A6H5L4S8_9PHAE (SpoU_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S8_9PHAE) HSP 1 Score: 496 bits (1276), Expect = 2.050e-168 Identity = 273/346 (78.90%), Postives = 291/346 (84.10%), Query Frame = 2
Query: 56 MSVAFNSGPAGAPLARIIATFFAARAARPAVNSSVVSR---------ATSTSTLPYGLWRPRYCDGAESGRSRDDIELDITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQRLVAER 1066
MSVAFNSGP+ APLAR+IA F A+RA RP SS R A + S+LPYGLWR R LDITS++N KVK MR+FHKRRTR+DGGKILAEGHRLVCDLIEGGLTPTLV+ AL ASPGPRLQAALETL ADVV+VAPAEVVQRCCDTVTSQGVVALV+RPVLPLP T+QTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTG+CVDYWAPKTVRASMGASFRLPSLRLESW EVVELMRARG+ +YAA+GG+RLSHFDADWTSPSALVVGAEARGL DAARL LESG I GVSVPL G ESLNAAVAGAIVLGEAQRQRLVAER
Sbjct: 1 MSVAFNSGPSAAPLARMIAAFVASRAGRPPSASSRDGRGGIRDRGIRAAAMSSLPYGLWRDR------------GGTLDITSARNPKVKLMRSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVI----ALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQRLVAER 330
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A835Z4A7_9STRA (tRNA/rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A7_9STRA) HSP 1 Score: 300 bits (767), Expect = 4.440e-93 Identity = 160/290 (55.17%), Postives = 211/290 (72.76%), Query Frame = 2
Query: 182 STLPYGLWRPRYCDGAESGRSRDDIELDITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
ST + LWRP SG D+ LDITS N ++K T HKR++R+ G++L EG RLV D ++ GL+P LV+VSPEAL + G L A L+ L +DVV +A + V R CDTV+ QGVVA+V RP+LPLP+T++ L+ DG+ DPGN+GT+VRTAA LG DAVV+TG CVD W+PK +RASMGA+FR+PS+ +W E EL++ARG+++YAA+GG+ +H++ W+ PSALVVG+EA GL AAR L+ G I G+ +PL+ ESLNAAVAGAIVLGEAQRQR
Sbjct: 3 STEAFELWRP-----PGSG----DL-LDITSPTNPRIK---TLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEGLSQAAREDLDRGVITGIRIPLSNGVESLNAAVAGAIVLGEAQRQR 279
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A8J5X903_DIALT (SpoU_sub_bind domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X903_DIALT) HSP 1 Score: 206 bits (523), Expect = 2.250e-57 Identity = 117/265 (44.15%), Postives = 159/265 (60.00%), Query Frame = 2
Query: 266 ITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLP--LPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDA-DWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
ITS +N VK +R RR RE G +L EG RLV D ++ G V+V+ L PG LQ L LPA VVS+A + C TV+ QG+VA V P LPD VL+ D + DPGN+GTLVR AAG G DAVV G C D W+PK +R++MG +FRLP + + W ++ ++ G+ + AA+GG S + A DW +P A+V+G+EA GL +A R L +G + V +P+A +SLNAA+AG ++L E RQR
Sbjct: 15 ITSGKNPVVKALRRLESRRHRERDGLLLLEGLRLVTDALDAGFCAETVLVAEALLAQQPG--LQRVLAALPAGVVSLADEAALAAACTTVSPQGIVAAVRMPERTGALPDAASLVLVLDNLSDPGNVGTLVRGAAGFGCDAVVALGACADAWSPKALRSAMGGTFRLPIVPAQEWAQLRAQLQRAGLRVLAADGGVAASDYAAVDWRAPLAVVIGSEATGLSEAVRADLAAGSVCAVGIPMAAGLDSLNAAMAGTVLLSECARQR 277
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A0P6YEI2_9CHLR (SpoU_sub_bind domain-containing protein n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0P6YEI2_9CHLR) HSP 1 Score: 192 bits (489), Expect = 6.720e-53 Identity = 117/265 (44.15%), Postives = 162/265 (61.13%), Query Frame = 2
Query: 266 ITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLT-PTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQRLV 1057
ITS N +VK R H+RR RE GKIL EG RLV D + G+ L S +A + AL + A +VS EV+Q DTVT QG+VA+ +RP L P + +LI D ++DPGNLGTL+R AAG G + V+L VD W+PK +RA MGA FRLP +W+E+ + + G+++Y A+ + +FD DWT+P+ L+VG E G+G+AAR + V++PLA ESLNAA+AG ++L EA+RQRL+
Sbjct: 4 ITSLANPRVKAARALHRRRMREREGKILLEGARLVHDAFQAGVAFEALFYTSDQAA------HIPEALRSC-AWLVSE---EVMQALSDTVTPQGIVAVAERPQLAWPTSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLPVRAGLTWEEIAQAVN--GLTVYVADARGAVRYFDVDWTAPTVLIVGGETEGIGEAARALAHTA----VAIPLAREVESLNAAMAGTVILFEARRQRLM 252
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A7S2B686_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B686_9EUKA) HSP 1 Score: 190 bits (483), Expect = 3.450e-52 Identity = 113/241 (46.89%), Postives = 145/241 (60.17%), Query Frame = 2
Query: 353 EGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHT------ESLNAAVAGAIVLGEAQRQRLV 1057
EGHRLV D + GL P V++ AL +S G RL AL L D V PA +V++ DT T QGV+A++ LPLP VL+CDGI DPGNLGTL+R+AAG G DAV+L C D W KT+R+ MGA FR+P + +W + +L+ + AA+ G L+H + DW +AL+VG+EA GL DA R + VPLA ESLNAAVAG++VL EAQRQR V
Sbjct: 1 EGHRLVLDALASGLQPEFVVIHDAALASSIGERLGTALAQLETDRVVRTPAHIVEQLSDTQTPQGVIAVLAHEPLPLPPAPTLVLVCDGISDPGNLGTLLRSAAGSGVDAVLLLPGCSDPWGLKTLRSGMGAQFRVPLQHMGTWADTSDLLADWSCTALAADAGGELAHDEVDWRRGAALIVGSEAHGLSDAVRA---DPSVQLCRVPLAEGLGASECLESLNAAVAGSVVLFEAQRQRRV 238
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: R7QT73_CHOCR (SpoU_sub_bind domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT73_CHOCR) HSP 1 Score: 192 bits (487), Expect = 4.570e-52 Identity = 121/287 (42.16%), Postives = 168/287 (58.54%), Query Frame = 2
Query: 209 PRYCDGAESGRSRDDIELDITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADV--VSVAP---AEVVQRC-CDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
PR+ L++TS++N +K R+ +RR R+ IL EG RL+ D + P + S + L R AA+ L ADV AP AE + R C+TV+ QGVVA+++RP LPLPD+ L+CD ++DPGN+GTL+R+AAG G DAV++T C D W K +RA MGA FRLP +SWDEV++++ G + A+GG + DW P+A+VVG EA G G+ A + G +VG+ PL ESLNAAVAG++VL E +RQR
Sbjct: 16 PRHLPHPTRALRTSRASLELTSARNPHLKLARSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLL------RRSAAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLPDSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLPVQVDQSWDEVMQVVHKWGCEVSVADGGGE-DYAKVDWCGPAAIVVGGEANGPGERAFQEAQ-GRVVGI--PLCSGMESLNAAVAGSVVLFEVRRQR 292
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A7S0LQQ5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQQ5_9EUKA) HSP 1 Score: 187 bits (474), Expect = 3.020e-50 Identity = 105/263 (39.92%), Postives = 156/263 (59.32%), Query Frame = 2
Query: 266 ITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAAL-ETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
++S+ N ++K +R +R R+ G ++ EGHRL+ D ++ G + V++S EAL A G RL +L E L A+ +++AP ++ DT T QGVV ++ +P L LP++ VL+ D I DPGNLGTL+R+AAG G ++ +L C D W K +RA MGA RLP + + + E ++R G AA+ ++ DW PSALVVG+EA GL + L D +PLA ESLNAA+AG++++ E RQR
Sbjct: 33 LSSTSNPRIKLLRKLQAKRARDKSGLMILEGHRLLTDALDAGYSADFVLLSEEALHAPEGARLARSLREVLRAEQLAIAPQSLIAELSDTQTPQGVVGMLQQPRLALPESPSFVLVLDRISDPGNLGTLLRSAAGAGVESALLLSGCTDPWGLKALRAGMGAQLRLPLVEVRGYAEAAGMLRRWGCHGVAADARGETDYWAVDWRQPSALVVGSEAHGLAEEV---LSDVDTQLCRIPLANGVESLNAAIAGSVMMYEVGRQR 292
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A7C7US29_9CHLR (RNA methyltransferase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7US29_9CHLR) HSP 1 Score: 185 bits (470), Expect = 4.050e-50 Identity = 108/263 (41.06%), Postives = 159/263 (60.46%), Query Frame = 2
Query: 266 ITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLG-DAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
+TS+ N KVK++R+ H+RR R + EG RLV + ++ G+ PTLV +P+ G L A +E LP + V +V++ DTV+ QG++A+V LP P+ VL+ D ++DPGNLGT++R+A GA+ V+LT VD ++PK VR +MGA F LP SW E+ E + R + + AEG +++ DWT PSAL+VG+EA G G +A RL E + +P+ G +SLN AVA +++L EA RQR
Sbjct: 1 MTSTANKKVKYVRSLHRRRVRHRERNFVVEGLRLVEEALKAGVVPTLVFFTPDLGSGRRGRELLAVIEDLPGECFVVTD-KVMRALSDTVSPQGILAVVPFLGLPFPENPWLVLVVDRVRDPGNLGTILRSAEAAGANQVILTPATVDVYSPKVVRGAMGAHFYLPIATRASWSEMAEALEGRQILLAEAEGEK--VYYEVDWTKPSALIVGSEAEGAGQEAGRLATER-----IVIPMQGRAKSLNVAVAASVILFEAARQR 255
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A1X6PKW2_PORUM (SpoU_sub_bind domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKW2_PORUM) HSP 1 Score: 187 bits (474), Expect = 1.620e-49 Identity = 116/273 (42.49%), Postives = 160/273 (58.61%), Query Frame = 2
Query: 260 LDITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGG--LTPTLVMVSPEALCASPGPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQRLVAERLG 1072
+++ S++N ++K +R +RR RE G +L EGHRLV D + P +V+ A P L A D + VA +VV CDTVT QGVVA+V RP + +L DG+ DPGN+GTL+R+AA GAD VVLT C D W+PK +RA MGA RLP L +EVV R RG+ + A+G + +++ DW +P+ LVVG EA G +A L + D+V ++P+ G ESLNAA+AG++VL EA+RQR A G
Sbjct: 90 VEVVSTRNPRIKAVRHLLRRRMREREGLLLLEGHRLVVDALGAARPAAPVHTVVATRQAAARLWPALSTATGVA-RDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTVVPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGRGLRLRVADGSAVMAYDGVDWAAPTVLVVGGEAEG--PSAALLAAADDVV--AIPMLGEVESLNAAIAGSVVLYEARRQRSEASGSG 357
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Match: A0A540V9T9_9CHLR (RNA methyltransferase n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540V9T9_9CHLR) HSP 1 Score: 183 bits (464), Expect = 2.950e-49 Identity = 111/263 (42.21%), Postives = 156/263 (59.32%), Query Frame = 2
Query: 266 ITSSQNTKVKFMRTFHKRRTREDGGKILAEGHRLVCDLIEGGLTPTLVMVSPEALCASP-GPRLQAALETLPADVVSVAPAEVVQRCCDTVTSQGVVALVDRPVLPLPDTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWDEVVELMRARGVSIYAAEGGSRLSHFDADWTSPSALVVGAEARGLGDAARLGLESGDIVGVSVPLAGHTESLNAAVAGAIVLGEAQRQR 1051
ITS+ N ++K +R H+RR R + G+IL EG RLV D + G+ P +V+ PEA+ RL L+ + ++ +P EV DTVT QG++A+V P PLP VLI D ++DPGN GTL+RTA G D V+L VD + K +RA MGA FRLP ESW+++ + + + +Y AE ++ + DW P+ALV+G EA G DAAR + +++P+ G ESLNAAVAGA++L EA RQR
Sbjct: 2 ITSTSNPRIKEIRKLHRRRHRHESGRILLEGVRLVEDATQAGVRPEMVLYVPEAVAGQERAARLLQQLQEQGVECLACSP-EVFASVSDTVTPQGILAVVPLPHRPLPSQPTLVLILDQVRDPGNAGTLLRTAEAAGVDLVLLAPGTVDPFNEKVIRAGMGAHFRLPLRICESWEQLAQQLPPEMI-LYRAEAEAQTPYDQVDWRRPAALVIGGEAAGPSDAARQRTHA-----IAIPMQGQVESLNAAVAGAVILFEAARQR 257 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig140.36.1 >prot_P-littoralis_Contig140.36.1 ID=prot_P-littoralis_Contig140.36.1|Name=mRNA_P-littoralis_Contig140.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=361bp MSVAFNSGPAGAPLARIIATFFAARAARPAVNSSVVSRATSTSTLPYGLWback to top mRNA from alignment at P-littoralis_Contig140:190434..197706- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig140.36.1 ID=mRNA_P-littoralis_Contig140.36.1|Name=mRNA_P-littoralis_Contig140.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7273bp|location=Sequence derived from alignment at P-littoralis_Contig140:190434..197706- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig140:190434..197706- >mRNA_P-littoralis_Contig140.36.1 ID=mRNA_P-littoralis_Contig140.36.1|Name=mRNA_P-littoralis_Contig140.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1083bp|location=Sequence derived from alignment at P-littoralis_Contig140:190434..197706- (Pylaiella littoralis U1_48)back to top |