mRNA_P-littoralis_Contig1008.8.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1008.8.2
Unique NamemRNA_P-littoralis_Contig1008.8.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: D8LEH7_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH7_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.540e-116
Identity = 193/243 (79.42%), Postives = 203/243 (83.54%), Query Frame = 1 
Query:   43 MLSLTARQVLLLLLVAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPGGPAAEEAELQE---SSREWGRWSGGGG 762
            MLS  A   L LL+ A       ATTLVAARF+GGVVIGADSRTSQGSFVAN  TDKI  VSPG+FLARSGSSADTQFV GV+EA++EAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWD REGGSVFSVPQGGSLLEQPFA+SGSG+VYALGYCDDNLRP L RDECVSHV+ ALEMAV RDGASGGVIRLCVVS DGVERWTVVPG  AA  A + E     RE  R S GGG
Sbjct:    1 MLSAFAAAALALLVAAAGLVD--ATTLVAARFDGGVVIGADSRTSQGSFVANSGTDKITPVSPGVFLARSGSSADTQFVAGVIEAKLEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDSREGGSVFSVPQGGSLLEQPFAVSGSGAVYALGYCDDNLRPGLGRDECVSHVRTALEMAVRRDGASGGVIRLCVVSADGVERWTVVPGMTAAAAAGVGEXXXGRREARRASDGGG 241
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A1Y1WB45_9FUNG (Proteasome subunit beta n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WB45_9FUNG)

HSP 1 Score: 224 bits (572), Expect = 3.830e-66
Identity = 105/203 (51.72%), Postives = 150/203 (73.89%), Query Frame = 1 
Query:  100 DTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPGGPAAEE 708
            + ++ TT++A +F+GGVV+GADSRT+ G+++ANR+TDK+  +   I+  RSGS+ADTQ V  +V+  M+ Y  + G  PTV+ AA+  + +CY NK+ LSAGII AGWD+R+G SV+++P GGSL  +PFAI GSGS Y  GYCD   RPDL+RDEC+  V+ ++ +A++RDG+SGGV+RL V++ DGVER   VPG    E+
Sbjct:    8 EVNLGTTIMAVQFDGGVVVGADSRTTTGAYIANRVTDKLTKIHDRIYCCRSGSAADTQAVADIVQYHMQMYTAQHGEAPTVKVAASLFQEICYQNKNNLSAGIIVAGWDERDGASVYNIPLGGSLHREPFAIGGSGSTYIYGYCDKVFRPDLSRDECIEFVKNSVSLAMTRDGSSGGVVRLAVITKDGVERQ-FVPGDQLPEQ 209
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A0K6FW39_9AGAM (Proteasome subunit beta n=16 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FW39_9AGAM)

HSP 1 Score: 214 bits (544), Expect = 1.090e-61
Identity = 106/202 (52.48%), Postives = 141/202 (69.80%), Query Frame = 1 
Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            V K  + ++ T+++A +FEGGVVIGADSRT+ GS++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   ++ Y  ++   PTV  AAT  + +CY NKD LSAGII AGWD + GGSV+++P GG L  QP+AI GSGS Y  GYCD   R    RDE V+ V+  L +A+SRDG+SGG IR+CV++ DGVER   +PG
Sbjct:    8 VLKKGEVNLGTSIMAVQFEGGVVIGADSRTTMGSYIANRVTDKLTHVHDRIYCCRSGSAADTQAVADIVHYYLQMYEQQYSERPTVHTAATIFQRICYDNKDALSAGIIVAGWDKQVGGSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEDGVERH-FIPG 208
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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: V3ZJH0_LOTGI (Proteasome subunit beta n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZJH0_LOTGI)

HSP 1 Score: 210 bits (535), Expect = 8.640e-61
Identity = 101/197 (51.27%), Postives = 137/197 (69.54%), Query Frame = 1 
Query:   91 KWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTV 681
            KWT      T+ A  F+GGVVIGADSRT+ G+++ANR+TDK+  V+  I+  RSGS+ADTQ V  +V+ ++  Y  E G  P V  AA   R LCY ++D +SAGII AGWD +EGG VF+VP GG ++ QPFAI GSGS Y  GY D   +P ++++EC+  V  AL +A++RDG+SGG+IRL  ++ DGVER T+
Sbjct:    5 KWT------TIAAVEFDGGVVIGADSRTTSGAYIANRVTDKLTKVTDKIYCCRSGSAADTQAVADIVKYQLNFYEMEMGEEPLVHTAAHTFRELCYDHRDNISAGIIVAGWDKKEGGQVFAVPLGGMVVRQPFAIGGSGSTYLYGYVDSQFKPKMSKEECLPFVANALSLAINRDGSSGGIIRLAAITKDGVERITL 195
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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8H8LV04_9AGAM (Proteasome subunit beta n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8LV04_9AGAM)

HSP 1 Score: 210 bits (534), Expect = 3.140e-60
Identity = 104/202 (51.49%), Postives = 140/202 (69.31%), Query Frame = 1 
Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            V K  + ++ T+++A +F+ GVVIGADSRT+ GS++ANR+TDK+  V   ++  RSGS+ADTQ V  +V   ++ Y  ++G  PTV AAAT  + LCY NKD LSAGII AGWD   G SV+++P GG L  QP+AI GSGS Y  GYCD   R    RDE V+ V+  L +A+SRDG+SGG IR+CV++ +GVER   +PG
Sbjct:    8 VLKKGEVNLGTSIMAVQFKDGVVIGADSRTTMGSYIANRVTDKLTFVHDRVYCCRSGSAADTQAVADIVHYYLQMYEQQYGDPPTVHAAATLFQRLCYENKDNLSAGIIVAGWDKEAGPSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEEGVERH-FIPG 208
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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8J2RYU8_9CRUS (Proteasome subunit beta n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RYU8_9CRUS)

HSP 1 Score: 211 bits (536), Expect = 3.390e-60
Identity = 98/196 (50.00%), Postives = 139/196 (70.92%), Query Frame = 1 
Query:   97 TDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVV 684
            ++ S  T+++A  F GGVVIGADSRTS G++VANR+TDK+  ++  I+  RSGS+ADTQ +  +V   +E +  + G  P V+ AA+  + LCY  +DQL+AGIICAGWD R GG VF++P GG  + Q FAI GSGS Y  G+ D N + D+ +DECV  V + L +A++RDG+SGGV+RL +++ DG+ER TV+
Sbjct:   56 SEHSTGTSIMAVEFNGGVVIGADSRTSTGAYVANRVTDKLTKITNHIYCCRSGSAADTQAIADIVNYHLEFHEVQLGEAPLVKTAASVFQELCYNYRDQLTAGIICAGWDRRHGGQVFNIPLGGMCVRQSFAIGGSGSTYVFGFVDSNFKKDMTKDECVEFVLKTLALAMNRDGSSGGVVRLGIITEDGIERRTVL 251
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A4P9XSG4_9FUNG (Proteasome subunit beta n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSG4_9FUNG)

HSP 1 Score: 209 bits (531), Expect = 4.020e-60
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVER 672
            V K  + ++ TT++A  F+GGVVI ADSRT+ G+++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   M+ Y  E    P  R AA   + LCY NKD LSAGII AGWD   GG V+S+P GGSL  QPFAI GSGS Y  GYCD   R  ++RDECV   + A+ +A++RDG+SGGVIRL +++  GVER
Sbjct:    4 VLKAGEANLGTTIMAVEFDGGVVIAADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYMQMYSVEHSEAPRTRVAAAIFQELCYKNKDALSAGIIVAGWDKHTGGQVYSIPLGGSLHRQPFAIGGSGSTYIYGYCDSAFRVGMSRDECVEFTKNAVSLAMARDGSSGGVIRLAIITEGGVER 199
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: E9GZ78_DAPPU (Proteasome subunit beta n=4 Tax=Daphnia TaxID=6668 RepID=E9GZ78_DAPPU)

HSP 1 Score: 209 bits (531), Expect = 5.900e-60
Identity = 98/196 (50.00%), Postives = 138/196 (70.41%), Query Frame = 1 
Query:   97 TDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVV 684
            ++ S  T+++A  F GGVVIGADSRTS G++VANR+TDK+  ++  I+  RSGS+ADTQ +  +V   +E +  + G  P V+ AA+  + LCY  +DQL+AGIICAGWD R GG VF++P GG  + Q FAI GSGS Y  G+ D N +  + +DECV  V + L +A+SRDG+SGGV+RL +++ DG+ER TV+
Sbjct:   20 SEHSTGTSIMAVEFNGGVVIGADSRTSTGAYVANRVTDKLTKITNHIYCCRSGSAADTQAIADIVNYHLEFHEVQLGEAPLVKTAASVFQELCYNYRDQLTAGIICAGWDRRHGGQVFNIPLGGMCVRQSFAIGGSGSTYVFGFVDSNFKKGMIKDECVQFVLKTLALAMSRDGSSGGVVRLGIITEDGIERRTVL 215
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8H7SDF9_9FUNG (Proteasome subunit beta n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SDF9_9FUNG)

HSP 1 Score: 208 bits (529), Expect = 7.400e-60
Identity = 103/200 (51.50%), Postives = 141/200 (70.50%), Query Frame = 1 
Query:   91 KWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            K  + ++ T+++A  F  GVVIGADSRT+ G+++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   ++ Y  +    P+VR A+   + LCY NKD L+AGII AGWD++ G SV++VP GGSL +QPFAI GSGS Y  GYCD N + ++ + ECV  V+ +L +A+SRDG+SGGVIRL V++ DGVER   VPG
Sbjct:    2 KQGEVNLGTSIMAVAFADGVVIGADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYLQLYSVQENEMPSVRTASALFQELCYQNKDMLTAGIIVAGWDEKNGPSVYNVPLGGSLHKQPFAIGGSGSTYIYGYCDSNFKENMTQTECVEFVKNSLSLAMSRDGSSGGVIRLAVITKDGVERM-FVPG 200
[Close]
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A1P8DB30_HALDI (Proteasome subunit beta n=2 Tax=Haliotis TaxID=6452 RepID=A0A1P8DB30_HALDI)

HSP 1 Score: 209 bits (531), Expect = 8.090e-60
Identity = 98/194 (50.52%), Postives = 135/194 (69.59%), Query Frame = 1 
Query:  100 DTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTV 681
            + +  TT+ A  F+GGVVIGADSRT+ GS++ANR+TDK+  V+  I+  RSGS+ADTQ V  +V   +  Y+ E G  P V+ AA   R+LCY ++D L+AGII  GWD R GG VFS+P GG L+ QPFAI GSGS Y  GY D   +  L+++EC+  V  AL +A++RDG+SGG++RL  ++ DG ER+T+
Sbjct:   30 ELTTGTTIAAVEFDGGVVIGADSRTTTGSYIANRVTDKLTKVTDYIYCCRSGSAADTQAVADIVNYHLNFYKMEMGEEPEVKTAANVFRDLCYEHRDNLTAGIIVGGWDKRGGGQVFSIPLGGMLVRQPFAIGGSGSTYLYGYVDSQFKVGLSKEECLQFVANALSLAMNRDGSSGGIVRLAAITKDGTERFTL 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH7_ECTSI1.540e-11679.42Proteasome endopeptidase complex n=2 Tax=Ectocarpu... [more]
A0A1Y1WB45_9FUNG3.830e-6651.72Proteasome subunit beta n=1 Tax=Linderina pennispo... [more]
A0A0K6FW39_9AGAM1.090e-6152.48Proteasome subunit beta n=16 Tax=Rhizoctonia solan... [more]
V3ZJH0_LOTGI8.640e-6151.27Proteasome subunit beta n=1 Tax=Lottia gigantea Ta... [more]
A0A8H8LV04_9AGAM3.140e-6051.49Proteasome subunit beta n=2 Tax=Ceratobasidium sp.... [more]
A0A8J2RYU8_9CRUS3.390e-6050.00Proteasome subunit beta n=1 Tax=Daphnia galeata Ta... [more]
A0A4P9XSG4_9FUNG4.020e-6052.55Proteasome subunit beta n=1 Tax=Thamnocephalis sph... [more]
E9GZ78_DAPPU5.900e-6050.00Proteasome subunit beta n=4 Tax=Daphnia TaxID=6668... [more]
A0A8H7SDF9_9FUNG7.400e-6051.50Proteasome subunit beta n=1 Tax=Mucor circinatus T... [more]
A0A1P8DB30_HALDI8.090e-6050.52Proteasome subunit beta n=2 Tax=Haliotis TaxID=645... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1008contigP-littoralis_Contig1008:29970..35236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEH7
Preferred namePSMB6
PFAMsProteasome
Model size1868
Max annot lvl2759|Eukaryota
KEGG koko:K02738,ko:K02741,ko:K11507
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0001889,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014070,GO:0014889,GO:0016020,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034097,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0043412,GO:0043500,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051602,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061008,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070555,GO:0070628,GO:0070646,GO:0070647,GO:0070887,GO:0071214,GO:0071257,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0090068,GO:0098586,GO:0098827,GO:0104004,GO:0140096,GO:1901423,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2000116,GO:2001252
Exons4
Evalue3.5e-122
EggNOG OGsKOG0174@1|root,KOG0174@2759|Eukaryota
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_004640.1
EC3.4.25.1
DescriptionProteasome subunit beta
Cds size735
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1008.8.2prot_P-littoralis_Contig1008.8.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1008 31061..35194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789347.521132-UTR-P-littoralis_Contig1008:29969..310601680789347.521132-UTR-P-littoralis_Contig1008:29969..31060Pylaiella littoralis U1_48UTRP-littoralis_Contig1008 29970..31060 -
1680789347.5812876-UTR-P-littoralis_Contig1008:35194..352361680789347.5812876-UTR-P-littoralis_Contig1008:35194..35236Pylaiella littoralis U1_48UTRP-littoralis_Contig1008 35195..35236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789347.5428042-CDS-P-littoralis_Contig1008:31060..312771680789347.5428042-CDS-P-littoralis_Contig1008:31060..31277Pylaiella littoralis U1_48CDSP-littoralis_Contig1008 31061..31277 -
1680789347.5546556-CDS-P-littoralis_Contig1008:31896..319941680789347.5546556-CDS-P-littoralis_Contig1008:31896..31994Pylaiella littoralis U1_48CDSP-littoralis_Contig1008 31897..31994 -
1680789347.5635371-CDS-P-littoralis_Contig1008:32661..328581680789347.5635371-CDS-P-littoralis_Contig1008:32661..32858Pylaiella littoralis U1_48CDSP-littoralis_Contig1008 32662..32858 -
1680789347.572649-CDS-P-littoralis_Contig1008:34971..351941680789347.572649-CDS-P-littoralis_Contig1008:34971..35194Pylaiella littoralis U1_48CDSP-littoralis_Contig1008 34972..35194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1008.8.2

>prot_P-littoralis_Contig1008.8.2 ID=prot_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MLSLTARQVLLLLLVAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFV
ANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTV
RAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFA
ISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRL
CVVSGDGVERWTVVPGGPAAEEAELQESSREWGRWSGGGGSGGG*
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mRNA from alignment at P-littoralis_Contig1008:29970..35236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1008.8.2 ID=mRNA_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5267bp|location=Sequence derived from alignment at P-littoralis_Contig1008:29970..35236- (Pylaiella littoralis U1_48)
GATTACGCACTACTGCCCGTGCTTCCCTGTTTTTACTGCAGTATGTTGTC
CTTGACTGCAAGGCAAGTTCTGCTGCTGCTACTAGTGGCAAAATGGACCG
ACACTTCTGTTGCAACAACGCTCGTGGCTGCCCGCTTTGAGGGAGGCGTC
GTGATCGGCGCGGACTCCCGCACCAGCCAAGGCAGCTTCGTGGCGAATCG
CCTCACGGACAAGATCGACCTCGTGTCTCCCGGAATTTTTCTGGCTCGCT
CGGGGAGCTCCGCGGGTACGTATGCAAGCAAGCACTAGCAGCAGCAGTCA
TGTTTTACAGCAGTTGAAGTAGTGGACAAATGGGGGTATACCCCTATATA
CCCACCGCCCTCTTCAGACAATTGGGGGTATACACCATAAAACGCGGATG
CGGGAGCTGCCCGCGGTCGGCCCAAACTCGACAAAACTCCATCTTGCGCG
TCGGTAGTATGCTCAGGAACCATGCCGAGCCTGTTAACCAGCTTCGATGG
GTTGTCGGGCACGTTTTCTGGCCCAACAGCACAGAAGAACCACCGGTCCA
CCCGCAATACCCCGGTGCGTGTGTCCGATGTCCCGGGGGATATGATATAT
CCCCGACAAGTCTCAAACGAAGTATATTTTTCAATCCCCCCCGTTTGCCC
GTGACTTTCACTTCTTTGTACAATGAGTTTGTCCTCTTGTGTCCGAAGGC
ATCCATCCCCCCATTCGTCCGCGTTGGAAGCCATCCACTGCACGTCCACT
CCGTCGCCTACCAGCCCGAACAGACGCACGGCACAACATCGAATAGCCAC
GTGGAGACCACCCCGTCAACCGACTCTCACGGCGCAACATCGAAACATTC
GGTCTCCTCGTAGCTTACCCCCTTCCTTCTTCGGTGGTGCACCACATACA
CACAAGCACACACACAAGCACGAAATATTGCGTGAGATACGTTAGTCAAC
AGAAATGAACGCACGTACGCCGTGTACAAGCAAAGCAAGGCCACGAGACT
ACTAAGTTCGCAATTTTTCTCTGTTCTATGGAGCGCGCGCGCTGGGGGAT
GCTTGTGTCTGTCCTTGTGTGTGTGGCGTACCGCGGGAGACAACTCTTAA
GTACTTCTGTGTGGCGTACCGCGGGAGACAACTGTTGGACTTCTGTGTAA
GCTGCAGCGAGACCGAGTCCTCGATGTGATGCCGGGAAAAAATGCCCTAA
AACCCCACCAAAGCTGTTGTACAGGCTCGGCATGAGCGTGCTACCGACGC
GCTCGAACAGAGTTCAGAGGGGGTTTGGGCTGCCCGGGGACAGCTTCCAC
GGGCACGTTTTTGGTACACCCCCATTTGTCTGAAAAGGGCGGGGGTTGTA
CCACTGTTTGCTCGGTTCATTTGTCTTTTACTGACATGTGCTACGTCACG
GAGCGCATCCTGAGGACAGGGGTGTGTGCACGTGTGGAATATTGTGCAAG
TACGTCTGAAGGTAGAATGACTGGTTGGCGGCAGTAGCACCGTCTCTGTA
TGCTGTAATCAAGGACACGATTTAATGTCTGATCAGGGCAACAGGATTTT
TTTTTCAACGGTACGTTTGAGTGCATGTGGGTGCATGTGGGTGCATGTGA
GTGCATGTGTATTGGCCGCGATGCTGCACCATAAAGAACACCGCAAGCCG
GACGACTACGATGCCGAACTACAGGCCGCTGCAGTATCGGAAGTAGGGGG
CGAACAGGTGCATCTACCGTTATAGCGCTCTCCTCGAGCTCGATGAGTCT
CTTCGACGGTTTTGGCTGTCCCGCTGAAGGGTTGTCTACATGGAAGTCCC
TTGTAAACTAGACTGGACCTCGTATGTATGCCTTCGTATTTGCCCTTGCC
TCTGCCGGCAGTGCCTTCGGTGTGTTACCTATCACAGGTGTATGTCTCTG
AGAAGTTTTGTGGTGTACAGTGTTCGGTTACCGCCTCGAAAAGTACACGT
GGTGCTGAATTTAATATTCGTGCATCCTCGACTCACGTTCGATTTGCGGT
TGGCTCGCAGAATCGAAGGTGACGGATCTTTCTCTCCGTGATGAAAAAAC
AAACACGTACGGCCTACCTACTATATACCGACCAACGGCTGCTGCGTAGA
CACGACACTGCAAGCTTAATTTTTTGTGCAAATGCGGGTTCAGCTTACTC
TCCCAACCATGTGGTCGCCACCGGCGTCAGGAATACACGAAAGCATGCAT
ACGCCTCTCCAGCTCGCACTTGATTTCCCGAACGGTAGAATCATGATGAT
CACTACCACCACACACCACACCCGGTGATCTCCCGAATCTTCCCATCATG
CCGACTATCACCTCGACTCACGCTCCGCATTTTCTGTTTTCGTTTTTTTG
GTTTCACCGGCACCTGCAAAAAATGAAGACACGCAGTTCGTCGTCGGCGT
GGTCGAGGCCAGGATGGAGGCCTACCGGACAGAGTTCGGCCGCTATCCCA
CCGTCCGAGCGGCAGCGACGGCCACGCGAAACCTTTGTTACGCCAACAAG
GATCAGCTGTCGGCGGGCATCATTTGCGCGGGATGGGACGATCGAGAAGG
AGGGTCGGTCTTCTCCGTACCTCAGGTAGACGATGCGGGCCCTGGGGGGG
AGGGGGGTACTCACTTTTTTATTGCCCTGAGTCATTTGGCCATTGGCCAC
GCAATCCCTTTTTAGGCGTATCACGGTTTCCACCTAGTGGAAGTATCGCC
GCCAATATCTTGGTGCTCTTTTGCGTTTTTCAGGAGGGGGATGGGGGCGG
GTAACGTTGTGGGTGTGTCAGGCAAAATAAATGAAGAAAACAGTCTCAGG
TGTTGTAAAACTCGTCACGCGGGAAGGAGATATTGAATAAACCCACGACG
ACGGGGGGAAGTATCGTGGATGAACAGCGTATTGTGGTGTCCCGCTTGTC
AAAATTGGTGGCGTTGTCGTGAAAACACATCTTCTCCCACGGATACCCGG
GGCCCGGCACTGAAGTTTGCCCTGATGTGTGCCTTGTATTTTTGTCTTCA
AGCTGTAACTGCCGTTGTTTTCAGACTTCAGTACCACTGCCTGCCTACGG
ATCGATCCCTCGTTCTTTTACAAACCCTTACCTTACTCACACACCCTGTT
TCTTCGAGGTGCTATTATTTCATGCGGTGTAGGTTTTCTCTTATTGCTCA
TATCATATCATATGTTTTTTTATTTTTTTTTATTTCGCGTGTGCGTTCAT
CGTGCGTTTGTTTTTGTTCGTGTTTTCGCATTTCTTGTTCAGGGAGGTTC
ACTTCTGGAGCAACCGTTCGCGATTAGTGGTTCCGGTTCGGTGTACGCCC
TAGGCTACTGCGATGACAACCTGAGACCTGATTTAGCAAGGTACTATGTA
AACCAAACCCAAAAAAAACATTTTGCTTTTGTTTTTGTTTTGTTGTTTTA
AGTACAGTACCAGGTAGTATTTTTGTTTTTTTTCTGTTTCGCATTGATCT
TGTTCATCGTGTGAGTGAAAGATCCGACTCATACCACATGAGGGTACCAG
CATATTTTTTGCTGGTCGAAGATGTGGCAGCGAATTCACAAAGGTAAATA
CGTGGTGTCAAGTCTGGCGCTCACCGCCCGCCGTGAGCGCATGAATGTGG
TCGTGATTTACATGTTCACGTCGTATGGAAAGGAGCGTCCGATGAGTTTT
TTTTCGGGTGAGTTACCCTCTTCACCTCGCTCATCCCTCCGCCCCTTTCT
TTATTCTGTTTCACCAACCACATGGATAGAAGAGGAAGGGACGCGAAGGG
GGGTGACGCGAGCACCCACACTTCTGTGCAAAACAAAACTAACCTTACCT
TCGCCTGCGGTTCTCTCCATGCTTGAAGATCCTCTCATCATGGTGTGAAA
ACGTTTATGTCACTCGTGGCATTTGGCCACTATCGCAGGATAGTTTACAT
GTATTTTTTTTTTCTGATATATTTGCCCGATGACAAATCTACGGAATGCA
TGCATTTAGGGACGAGTGCGTCTCGCACGTGCAGAGGGCGCTAGAGATGG
CGGTCAGCCGAGACGGCGCTTCGGGGGGCGTGATCCGGCTGTGCGTTGTT
TCCGGTGATGGGGTGGAGCGGTGGACGGTCGTCCCCGGCGGGCCGGCGGC
AGAGGAGGCAGAGCTGCAGGAGAGCTCGAGAGAATGGGGTAGATGGTCCG
GCGGTGGCGGCAGCGGTGGTGGATGATGGTGTTGCATCCCCCGGCATGGG
TTGACACTCTGTTCTGTTGTACATACATACATTGCATCATGAAAGTAAAA
TAGTTCCGGACCTTGTTAGTTATCCCCCGCCTGCTAAGCCGCCACCGGAA
TAGTTGATGCGAGAGATGCAGGAGGGAGAGAGACTGTGCGTACCACAAGC
GTAAGAGCAGGGTGTGTGACCTGCCTTAATGGTACGTTGTCCCGTTTTGG
CCATCGTGCTTGTTTAACTCCAGAGGCGTTTGTTTCTGCTGCCGGAAATG
GGTCGGTGCTCGGTATCGTGCCTTTTTGGCACTAATAAAATCTCGGGGGC
GGGGGGAATACTTTACGAAATGTGGGGTGCAGAGAGAGAGATGGGCTGCG
TAACAGAGCAGGCTGGATAAAGCAAATATTAGCTGTGGTCGAAAGCGAGG
TCCCATGATCGGATGGGCAAAGCATAAAACAGTCGAGAGCAGCTCGAAGT
ATCATACCCTACATACACAGCGTTGCGCATGTCTTCTCACAGAAATGGGC
GACGACGGGCAGATATCCATGCTTGTCTTCGTAGTAAACTGCTGTACATA
ATCCCGTCTGAAATAACCATCAAACCAAATCAAAGAAAGGACACGCATAC
GCACTTGACACAATCTATGCTTCGATCAGAGTCAGTATCAGATTTGGCTG
ATAACTCTCTCGCAGGGTTGAGAGTCCCCTCAAGAGATTTGCGTTTGCGC
GCCTCTAAAAAACTGCTGAGGGTGTCGTGATGGAGGTGTAGGACTCACGA
CAACAACGCGTGCCGTATCAGAGTCGTCAAAGACGAAACCGGAGCAAGCG
CGGTTTTCACCCAACCAGGATCGGACAGCGGGAAGCGCGAAGCGCCGTGG
GGTGCTCGGCGAGAGTCGTATGAGGGGTGAGCTGCATCCCACGCGTGGGG
ACCGTGGGAAATGAAAGCAAGACATGGAACCCGTGAACACACTGGAGCAA
GCAGGAAGAGCAGCAACACGCGACTAAACTGGTGCGAGCACACCAAAAAT
GGGAGAATGGGAGAATACCTGCCGCCCACCCTTCTACGCAACACCTTCAA
CAGCCCCGCCAAAACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1008:29970..35236-

>mRNA_P-littoralis_Contig1008.8.2 ID=mRNA_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig1008:29970..35236- (Pylaiella littoralis U1_48)
ATGTTGTCCTTGACTGCAAGGCAAGTTCTGCTGCTGCTACTAGTGGCAAA
ATGGACCGACACTTCTGTTGCAACAACGCTCGTGGCTGCCCGCTTTGAGG
GAGGCGTCGTGATCGGCGCGGACTCCCGCACCAGCCAAGGCAGCTTCGTG
GCGAATCGCCTCACGGACAAGATCGACCTCGTGTCTCCCGGAATTTTTCT
GGCTCGCTCGGGGAGCTCCGCGGACACGCAGTTCGTCGTCGGCGTGGTCG
AGGCCAGGATGGAGGCCTACCGGACAGAGTTCGGCCGCTATCCCACCGTC
CGAGCGGCAGCGACGGCCACGCGAAACCTTTGTTACGCCAACAAGGATCA
GCTGTCGGCGGGCATCATTTGCGCGGGATGGGACGATCGAGAAGGAGGGT
CGGTCTTCTCCGTACCTCAGGGAGGTTCACTTCTGGAGCAACCGTTCGCG
ATTAGTGGTTCCGGTTCGGTGTACGCCCTAGGCTACTGCGATGACAACCT
GAGACCTGATTTAGCAAGGGACGAGTGCGTCTCGCACGTGCAGAGGGCGC
TAGAGATGGCGGTCAGCCGAGACGGCGCTTCGGGGGGCGTGATCCGGCTG
TGCGTTGTTTCCGGTGATGGGGTGGAGCGGTGGACGGTCGTCCCCGGCGG
GCCGGCGGCAGAGGAGGCAGAGCTGCAGGAGAGCTCGAGAGAATGGGGTA
GATGGTCCGGCGGTGGCGGCAGCGGTGGTGGATGA
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