mRNA_P-littoralis_Contig140.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.97.1
Unique NamemRNA_P-littoralis_Contig140.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:458690..459463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size231
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.2996776-UTR-P-littoralis_Contig140:458689..4587401680789653.2996776-UTR-P-littoralis_Contig140:458689..458740Pylaiella littoralis U1_48UTRP-littoralis_Contig140 458690..458740 -
1680789653.3413377-UTR-P-littoralis_Contig140:459436..4594631680789653.3413377-UTR-P-littoralis_Contig140:459436..459463Pylaiella littoralis U1_48UTRP-littoralis_Contig140 459437..459463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.3108869-CDS-P-littoralis_Contig140:458740..4587711680789653.3108869-CDS-P-littoralis_Contig140:458740..458771Pylaiella littoralis U1_48CDSP-littoralis_Contig140 458741..458771 -
1680789653.3232863-CDS-P-littoralis_Contig140:459314..4594361680789653.3232863-CDS-P-littoralis_Contig140:459314..459436Pylaiella littoralis U1_48CDSP-littoralis_Contig140 459315..459436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.97.1prot_P-littoralis_Contig140.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 458741..459436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.97.1

>prot_P-littoralis_Contig140.97.1 ID=prot_P-littoralis_Contig140.97.1|Name=mRNA_P-littoralis_Contig140.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=51bp
MGGEIMWASATLIVRYWGPRILSSLLRGGPETSVVRCSPTEKRSQQPVRG
*
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mRNA from alignment at P-littoralis_Contig140:458690..459463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.97.1 ID=mRNA_P-littoralis_Contig140.97.1|Name=mRNA_P-littoralis_Contig140.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig140:458690..459463- (Pylaiella littoralis U1_48)
CTGAGACCAAATGCTGCCCAGATCCGGATGGGCGGTGAGATTATGTGGGC
CTCTGCGACACTCATAGTACGTTATTGGGGTCCAAGAATACTCAGTTCGC
TTCTCCGTGGGGGCCCCGAAACTTCTGTAGTACGTTGTTCCCCGACAGAG
TCACGGTCGGCAACAACAGAGTATGATGGATTGGGCGAAAACTTTCGTGG
CTGCTTTAGCAGCGTCTTGTTGTTGTTGACCTTGTTGTCAATCGAAATGC
ACCTCCCATCATCGCTTCCGGCTCTGCTGCTGCTGTGCAGCAGTACAGCT
GCAGCTAGCTGCCTCTTCTGCTGATGAACTGCTGGATGTCGCTTGGTTGT
GTCATGAGTGTTCGAGTGCGGCACACCCACTGTGCCCGTAGTAGCAGGGG
GCAGGTAGAGAGGGAGAACCACACCGCTGTACCCTTCAGCTATCTGTTGT
CAAGGGTGTGTATTCTGATGTTGACGCGCGCGCTATCATGAATGTCCGTA
TCATACCGCAGTGATTTCGTACAGCAGTCACTCGTCTCCCCATCATGAGC
ACACACATCATGTATTATGTCTGGTGCGAGCCCTCATCCACCATCCTCTA
CAGGAAAGGAAACTCGGAGGGCGGTGGTCACATAGGAGCCGATACCAGTA
AGCGATCTAGGCGGATACATGTGAGTACCACGCAGTAAACAGAAAGCGTT
CACAACAACCTGTTCGAGGCTGAGCTGTATACAACAAGCAGCAGCAGCAG
CAGCAGGACGAGGAGCAATCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:458690..459463-

>mRNA_P-littoralis_Contig140.97.1 ID=mRNA_P-littoralis_Contig140.97.1|Name=mRNA_P-littoralis_Contig140.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=153bp|location=Sequence derived from alignment at P-littoralis_Contig140:458690..459463- (Pylaiella littoralis U1_48)
ATGGGCGGTGAGATTATGTGGGCCTCTGCGACACTCATAGTACGTTATTG
GGGTCCAAGAATACTCAGTTCGCTTCTCCGTGGGGGCCCCGAAACTTCTG
TAGTACGTTGTTCCCCGACAGAAAAGCGTTCACAACAACCTGTTCGAGGC
TGA
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