mRNA_P-littoralis_Contig14.255.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.255.1
Unique NamemRNA_P-littoralis_Contig14.255.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:1039748..1044187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.1163647-CDS-P-littoralis_Contig14:1039747..10398071680789653.1163647-CDS-P-littoralis_Contig14:1039747..1039807Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1039748..1039807 +
1680789653.1280422-CDS-P-littoralis_Contig14:1043859..10441861680789653.1280422-CDS-P-littoralis_Contig14:1043859..1044186Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1043860..1044186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.255.1prot_P-littoralis_Contig14.255.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 1039748..1044186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.255.1

>prot_P-littoralis_Contig14.255.1 ID=prot_P-littoralis_Contig14.255.1|Name=mRNA_P-littoralis_Contig14.255.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
SGHERKRTKQHRCHHGPDDELRLELDGVLDVMRDSDGRFTWDSLRAHLEA
AMKMATDLHLLDAREVLTDTIARGNRLVAACSDPVIVLGVFSKMLPSVHG
MSQGVYEVVCADLRKVTLLARNFFTNPGG
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mRNA from alignment at P-littoralis_Contig14:1039748..1044187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.255.1 ID=mRNA_P-littoralis_Contig14.255.1|Name=mRNA_P-littoralis_Contig14.255.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4440bp|location=Sequence derived from alignment at P-littoralis_Contig14:1039748..1044187+ (Pylaiella littoralis U1_48)
TCAGGCCACGAGCGCAAACGCACCAAGCAGCACCGCTGCCACCATGGTCC
AGACGACGAGGTACCGTACTGCCGTTGCTGTACGATATCGTACTGCGGTT
GCTGTTCAATGACTAGATGCGTGTGTGTATCCGTGTTTGTTCGTCACATC
TAGTCTGCACCTTTCGGTTGAGTGGGCGCACTAGCTGGGGCGACACAGAA
AGGTCAAACAGGAGCTTTCTGCTGCCTACCTGGTAGATACTATTTCTATC
TTTTGTACGACACGGCGGCTGTGCGCTGTACAATGGCGAGGGAGCGACGT
CATTATGCTGTACCCCGCAGACGTACATTGCTGTACCGTACTGTTGTGCC
CTGCTCATCACGTATACTGTACAGTCGCTGAGCAGTACTGCTGGACCGGG
CTGCGGTATACTGTGCCAGGCTAATATTTATCGATATAAACGGCGATACC
GCACTGCTGTATCTGGCGGCGGTATGATAGGTTTGGCTGATACTTTCCAC
GAATATTCAGCCCTGCTGATGTATAGTACTTCGAAGCATTGCATAGCTGT
ACTGCTGTACCTGGCCCCGTTTTGCTGTGCCAGGCTGGCTCTGACCTATG
TGTACCGCTGTACCGCACTGTTGTACCTCGCGGCGGTTTGATATGCTTGG
CTACCATTTTATGCGAATGTTCAGCCCTACTCATGTATAATGCCGTACTG
CTGTACCTGGCCCCGGTATGCTGAGCCAGGCTAATATTTCACGATGTTTA
CTGCTGTGCCGTGTACCTATACTTCACGGTTCGCCGTTCACAACGCTTTC
TTTCGACCCCTGTGTTCCGCCACATACGCACGATACTTTACCCAAAGTTT
GATATCTTACAGCAGCAGGATAGTCGAAAATTCACGTATGCACTGCTGTA
CGTCACACAGATCTCCGACCACAATTCTGTGGTCTTGCATATATCGCAGA
TATGATCAGCAGTCGCGTTACATGGTTACATTTCTGTTGACCCTGGAAGA
TGGGAAAACACGCAAAACACTCGTAGTGATAGAAGTGTACCTGCGACAGA
GCGCATGGCGACGCTCACATTACTGCTGTACTTCCTCTGTGCCATAAGTA
AAGGTCTTGATGGGGGGCAAATCATATCTCGCCAACCTAGTCACTCACGA
TATTACAGTTAGGCTTGTCGGAAAGCTATGGATTTGAGGATGCCTCTAAA
AAAAAAAAAAGTTGAATCCGATTCGTAATTACTGAGAAATAGGGTGTCGA
ATATTGGGAATTTTGGCGGGTTTTAGGGAATGTTTTTACCATCTTTCGAT
CCCCAAGTGTATTGGTTTTAGTGTGGGGTCACTATTGTACTGGTTTTAAT
ATAGAGGCACGCGACGTGGATCGTTGAGTAGAGCGGGGGGTTGGGTGAGG
GCCCTACTGTTGCTTGCTTTGCCCCGCAAGTGTCTTGGTTTTAGTGTGCC
CCCCAAGTGTCTTGGTTTTAGTGTAGGGTCACTATTATACTGTTTTTGGT
ATAGGGGACGCGTGATGGATCGTTGAGTAGAGGGGGGGCAAGGTTTAGGG
TCAGGGATAATTCTTGATTTTTTCGTCTTGTTTTTGTCAGTGCCCCCCCG
CCCCCCCTGGTCGGGGGGCAAAATACCTGCAAAATACGGCCTTTTTCAGG
TCGACTGTTTTTTTCTCGGCCGCTCATGCACGCGTGGTGGTGCGTGCAAA
AAAAAAAAACACGGACTTCAACTCAAAAAACACCAAGGATTTAAAAAAAA
TGGTCGCCTGCGGCATCGGACACGGTTAACGGTCTGTGTAAACATGAAGA
CCTTTACTTATGGCACAGAGGAAGTATATATTGTGCAACGACGCTACAGT
AGCGCACACGGTGGTTCACCAGGTAAGCGACACTCGTGCCTACATCACTA
CCGTATATATTGTGCAACGACTTAATAAGCACATACGGCGGTACACCGGG
TACACGACACCCGATACTACGTGACGTCGCGGGAACATATATTTACGGCT
GAATATATCGTACATGAGCGTATGGGCTAGAGTATACGGCTGTTACGACT
GGAAAGTAGAGATGCTGAGGTATATACCGCGGAAATAGATGCTGGCATAT
GCGTAAAAGTACAGATGCCGACGAACACTGCGCAACGACTGCGAAGTGTA
ATACTTTTGTAACTGCTGTAAAATTAGGGATGCCGAGGTCTACTGCAGAA
ACGCCTGAAAGTATAGGTGCTGATATATAATGCTGTCACGAGGGGTATTT
CGTCAGGGCACGGGGCGGTTGCGCCATGTACTGCTGCACCACCGCTGATA
AAGGAGTACCATCCAAGAGGATTACCTATGAAGAGGGCAGTGTATACGGC
TGTAATGCAAGGTATTACAGAAAACACAATTATCCCTCGTGTTTCATCCT
TCAGCGGCGTATAGGAGTCCGGCAGTATCACCGTATCTATTACGGCAAAT
TGCGAAGTACGAAGTACGCGTTACTATTACATGAACGTACGACCGAGGTT
ACGAATGCCCCTTACGTCAGTCGACTGCGATTGCATTCATACAGCAGCGA
CGATCATGATCATACGACGAGGACGATAATTGTCATTAACGAACACCCTT
ACGATTGCACATCGACAAACGTGGGGGTGTGTAAGGCGACAAAGACGACT
TTACGGCGACGACGGCATTTCTCTCTAACGAACAACTTTTTTGCGGTAAC
ACGACGACGACTGCGGTTGGACGGCGATCATGCGGCGACGGCGTCTATTT
TGGTGAAGCCTTATATTTTTCACGAGTGCACGGCGACGGTTAATTTTTTT
GCACGGCGACGAATATAATGGGGCGACGGCAACTATTTGTTATTTTTCCT
TTCAACACCGCACGCACGTACCGACGCACATGCATCGCTATATCTCGCAC
GGCAGTTAAGGTAGAGCACGCAAACACACACACAAACGGCACACACATCA
GAGCACCCCATTGCAATAGCTTTTGTTTTTGACCGGCCAAAGTCTTGTCT
TTTTCACGATTGCACGGCGACGAATACAATTTTACAATGCGGCGACAGCG
ACTATTTCCGTGAAAGCTGGTCTTTTTCACGATGGGACGGCGACGATTAC
AATGCGGCTACGGCGACCATTTTCGTGAAGTCTTGCCTTTTTTCACGATT
GCATGGCGACGATTACAATGTGGCGACGGCGACTATTTTCGTAAAGTCTT
GTCTTTTTCACGATTGCACGGCGACGATTACAATTATACAATGCGGCGAC
GGCGACTAATTTCTTGCATTTTTCACGATTGCATGGCGACGATTACAATG
CGGCGACGGCGATTACTTTCGTGAAAGCTTGTCTATTTCACGATTGCACG
GCGACCAACACATTTTTTTTGCACGGCGACGATTACAATGCGGCGACGGC
GATTATTATCGTGAAGTCTTGATGATCACAATGCGGCGACGATGACGATT
TCCGTGAAAGCTGGTCTTTTTCACGATGGGACGGCGACGATTACAATTTT
TCACGATTGCACGGCGACGATTACATCTTTTGCACGGCGACGATAACAAT
GCGGCGACGGCGACTATTTTCGTGAAGTCTTGCCTTTTTCACGATTGCAC
GGCGCCGATAACAATGCGGCGACAGCGACTATTTTCGTGAAAGCTTGTCT
TTTTCACGATTGCACGGCGACGATTACAATTTAACAATACGGCGACGGCG
ACTATTTTCGTGAACCTTGTCTTTGGGTTTTCACGATTGCAGGGCGACGA
ATACATTTATTTTTGCACGGCGACGATTACAATGCGTCGACGGCGACTAT
TTTCGTGTGAAGTCTTATCTTTTCACGATTGCACGGCGACGATTTTAATT
TTTGCACGGCGACGACTACAATGTGGCGACGGCGACTATTTTCGTGAAGT
TTTGCCTTTTTCACGATTGCACGGCGACCATTACTACTTTTTGCACGGCG
ATGATAACAATTTTACGACGGCGACGACGGCATTTCTCTTTAACGTACAA
TTCGATTACATTGGGAGTCACGACTTCCTGACGACCCATACGACGACGAT
TACCACGCTAACGCAGCCGTTGGCATGCCGTGTGTTCCCGACCCGCCGTG
ACCAAATCGTAGCTCCGACTGGAGCTGGATGGCGTTCTCGACGTCATGCG
CGACTCCGACGGGCGGTTCACGTGGGACTCCCTACGTGCCCATCTCGAGG
CCGCCATGAAGATGGCCACGGACCTTCATCTCCTAGACGCGCGGGAGGTT
CTGACCGACACGATTGCGCGCGGTAATCGGCTGGTGGCCGCGTGCAGCGA
CCCCGTCATTGTGCTCGGGGTGTTCTCCAAGATGCTGCCGTCGGTGCACG
GCATGTCCCAGGGGGTCTATGAAGTGGTCTGTGCCGACCTGCGCAAGGTC
ACGTTGCTGGCCCGCAACTTTTTCACCAACCCTGGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:1039748..1044187+

>mRNA_P-littoralis_Contig14.255.1 ID=mRNA_P-littoralis_Contig14.255.1|Name=mRNA_P-littoralis_Contig14.255.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig14:1039748..1044187+ (Pylaiella littoralis U1_48)
TCAGGCCACGAGCGCAAACGCACCAAGCAGCACCGCTGCCACCATGGTCC
AGACGACGAGCTCCGACTGGAGCTGGATGGCGTTCTCGACGTCATGCGCG
ACTCCGACGGGCGGTTCACGTGGGACTCCCTACGTGCCCATCTCGAGGCC
GCCATGAAGATGGCCACGGACCTTCATCTCCTAGACGCGCGGGAGGTTCT
GACCGACACGATTGCGCGCGGTAATCGGCTGGTGGCCGCGTGCAGCGACC
CCGTCATTGTGCTCGGGGTGTTCTCCAAGATGCTGCCGTCGGTGCACGGC
ATGTCCCAGGGGGTCTATGAAGTGGTCTGTGCCGACCTGCGCAAGGTCAC
GTTGCTGGCCCGCAACTTTTTCACCAACCCTGGCGGG
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