mRNA_P-littoralis_Contig14.175.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.175.1
Unique NamemRNA_P-littoralis_Contig14.175.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.175.1 vs. uniprot
Match: A0A6H5K883_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K883_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.760e-14
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:   20 MRQIRCGNVRSDVVQLGCAALGRAPLAQGYYLVESLKSPDTRRVSFLV 163
            MR+  CGNV SD+VQL CAALGRAP A  YYLVE +KS DTRR+ FLV
Sbjct:    1 MREKSCGNVLSDIVQLSCAALGRAPSAPSYYLVELIKSRDTRRLYFLV 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K883_9PHAE2.760e-1470.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:716530..716833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.9465961-UTR-P-littoralis_Contig14:716529..7165481680789650.9465961-UTR-P-littoralis_Contig14:716529..716548Pylaiella littoralis U1_48UTRP-littoralis_Contig14 716530..716548 +
1680789650.97321-UTR-P-littoralis_Contig14:716698..7168331680789650.97321-UTR-P-littoralis_Contig14:716698..716833Pylaiella littoralis U1_48UTRP-littoralis_Contig14 716699..716833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.9604747-CDS-P-littoralis_Contig14:716548..7166981680789650.9604747-CDS-P-littoralis_Contig14:716548..716698Pylaiella littoralis U1_48CDSP-littoralis_Contig14 716549..716698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.175.1prot_P-littoralis_Contig14.175.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 716549..716698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.175.1

>prot_P-littoralis_Contig14.175.1 ID=prot_P-littoralis_Contig14.175.1|Name=mRNA_P-littoralis_Contig14.175.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MRQIRCGNVRSDVVQLGCAALGRAPLAQGYYLVESLKSPDTRRVSFLVD*
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mRNA from alignment at P-littoralis_Contig14:716530..716833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.175.1 ID=mRNA_P-littoralis_Contig14.175.1|Name=mRNA_P-littoralis_Contig14.175.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=304bp|location=Sequence derived from alignment at P-littoralis_Contig14:716530..716833+ (Pylaiella littoralis U1_48)
GTTTCATTTCACCCCTTGAATGCGACAAATTAGGTGCGGAAATGTTAGGA
GTGATGTTGTTCAACTTGGTTGCGCCGCGCTCGGGAGGGCACCTTTGGCC
CAAGGTTACTACCTCGTAGAGTCCCTCAAATCGCCCGACACTCGGAGGGT
GTCCTTCTTGGTGGATTAGGTGCCGATGAAATCCTGGCGAAAATTCGGAT
CAGCACTACAGAGCGCGTAATCATCATTGCCAAGGGTTGCCTACAAAACG
CGGCGGAACCTCTCAAAACAGGACAGGCACGGTCGCTGACCCTGGAGAGT
TGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:716530..716833+

>mRNA_P-littoralis_Contig14.175.1 ID=mRNA_P-littoralis_Contig14.175.1|Name=mRNA_P-littoralis_Contig14.175.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig14:716530..716833+ (Pylaiella littoralis U1_48)
ATGCGACAAATTAGGTGCGGAAATGTTAGGAGTGATGTTGTTCAACTTGG
TTGCGCCGCGCTCGGGAGGGCACCTTTGGCCCAAGGTTACTACCTCGTAG
AGTCCCTCAAATCGCCCGACACTCGGAGGGTGTCCTTCTTGGTGGATTAG
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