mRNA_P-littoralis_Contig14.165.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.165.1
Unique NamemRNA_P-littoralis_Contig14.165.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.190e-25
Identity = 61/116 (52.59%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   40 DRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPNEAQKGTWLKRTLRKINPVAKVKNAFRRS-RSRRSAGSKINNDDSKRDS--IVSNQYSLHVVADGFEVRLDEEFVWGW 378
            D D P   WGD  VL +T+TG VVV++ G +VI+  NP +A+KG W +  +RK NP+ KV +AFRR   SRR   S  +  DS  D+  IVS  YSLHVV  GFEVRL+ EFVWGW
Sbjct:  542 DSDGPLPYWGDGTVLKVTETGDVVVSIAGEIVIEMANPRKAKKGGWFRNHVRKHNPIRKVGDAFRRHLHSRRKGSSNSDPSDSVHDTDTIVSTDYSLHVVEKGFEVRLEGEFVWGW 657          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.370e-25
Identity = 74/151 (49.01%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    7 EATAAVDKTKNDRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPNEAQKGTWLKRTLRKINPVAKVKNAFRRSRSRR----SAGSKINNDDSKRDSIVSNQYSLHVVADGFEVRLDEEFVWGWDVSTSR*PP-------GTCVSFF 426
            EATAAV K    R  P R +GDD+VL +T TG VVVTVGG +V+++RNP+  Q G WL++ LRK NP+A +    RR R RR    S GS      +  D IVS  YSLHV   GFEV+LD  FVWGWDV      P       GTC   F
Sbjct: 1553 EATAAVAKNVPGR-PPQRYFGDDIVLQVTKTGDVVVTVGGRIVVEKRNPSGGQGG-WLEKQLRKANPLATLGRIIRRHRLRRERNGSGGS------NGVDGIVSFGYSLHVAEKGFEVQLDGVFVWGWDVDRENPQPFDVGHALGTCEFCF 1695          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.690e-22
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 GSEATAAVDKTKNDRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPNEAQ---------KGTWLKRTLRKINPVAKVKNAFRRSRSRRSAGSKINNDDSKRDSIVSNQYSLHVVADGFEVRLDEEFVWGWDVSTSR*PP 405
            GSEAT AV K       P R +GDD+VL +T TG VVVT+GG +V+++RNP   Q         +G W+++ LRK N +A +    RR R RR     +  D +  D IVS  YSLHVV  GFEV+L+  FVWGW + T    P
Sbjct: 1550 GSEATTAVAKNVPSS-PPQRYFGDDIVLQVTKTGDVVVTIGGQIVMEKRNPLRRQAENLDQSGGRGNWVEKQLRKANSLATLGRIIRRHRLRRENEGGV--DSNGADEIVSFGYSLHVVEKGFEVKLEGVFVWGWYLDTESPEP 1690          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.860e-22
Identity = 66/143 (46.15%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    4 SEATAAVDKTKNDRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNP--NEAQK-------GTWLKRTLRKINPVAKVKNAFRRSRSRRSAGSKINNDDSKRDSIVSNQYSLHVVADGFEVRLDEEFVWGWDVSTSR*PP 405
            SEATA + K       P+  +GDD+VL +T TG VVVTVGG +V+++RNP   +A+K       G WL+R L K NP+A +    RR R RR    K +   +  D  VS  YSLHVV  GFEV+LD  FVWGWD+     PP
Sbjct:  558 SEATAVMAKNGPSIPPPTY-FGDDIVLQVTKTGDVVVTVGGRIVVEKRNPFARQAEKLDPSGGRGNWLERQLWKANPLATLGRIIRRRRLRREG--KSSGGSNGIDENVSFGYSLHVVQKGFEVQLDGVFVWGWDLDKENPPP 697          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.560e-17
Identity = 59/135 (43.70%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   19 AVDKTKNDRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPNEAQKGTWLKRTLRKINPVAKVKNAFRRSRSRRSAGSKINND-------------DSKRDSIVSNQYSLHVVADGFEVRLDEEFVWGWDV 384
            A D  K     P   WGDDVVL +TD G V+VTVG  VV+ +RNPN  +K  W+K+ L    P  KVK  FRR   R   G +  ND             D  + ++ S  YSLHVV +GF+VRL+  FVWGW V
Sbjct: 1372 AADMPKAISSTPEGYWGDDVVLKVTDMGDVLVTVGDRVVVQKRNPN--RKVGWVKK-LGNSRPAKKVKGIFRRLGRR---GKRDKNDNXXXXXTRENNARDDDKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1500          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.440e-16
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   52 PSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPNEAQKGTWLKRTLRKINPVAKVKNAFRR-SRSRRSAGSKINNDDSKRDS--------------IVSNQYSLHVVADGFEVRLDEEFVWGWDV 384
            P   WGDDVVL +TD G V+V VG  VV+ +RNPN  +K  W+K+ L    P  KVK  FRR  R  +   + I+ND + R++              + S  YSLHVV +GF+VRL+  FVWGW V
Sbjct: 1548 PEGYWGDDVVLKVTDMGDVLVAVGDRVVVQKRNPN--RKVGWVKK-LGNSRPAKKVKGIFRRLGRRGKRDKNDIDNDSNTRENNAXXXXXXXDNKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1670          
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.340e-14
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   46 DEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRNPN-EAQKGTWLKRTLRKINPVAKVKNAFRRSRSRRSAGSKINNDDSKRDSI-----------VSNQYSLHVVADGFEVRLDEEFVWGW 378
            DE  R    DV L +T+TG V+VTVG  VV+ +RNP    +K +WL+R + K  PV K+K+ F R   RR  G+   ++ ++ D             VS  YSLHVV +G EVRL+  F+WGW
Sbjct:  292 DEARRXXXXDVALKVTNTGDVLVTVGDLVVVQKRNPMWTKKKESWLQRKVAKSKPVKKIKDVFGRL-GRRGKGNGKTDNKARSDXXXXXXGNGDGAPVSTMYSLHVVENGLEVRLEGVFMWGW 413          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0Y7_ECTSI1.190e-2552.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI1.370e-2549.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI1.690e-2244.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN98_ECTSI2.860e-2246.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS3_ECTSI1.560e-1743.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI3.440e-1643.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9F6_ECTSI1.340e-1441.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:674265..675387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size487
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.6608093-CDS-P-littoralis_Contig14:674264..6743721680789650.6608093-CDS-P-littoralis_Contig14:674264..674372Pylaiella littoralis U1_48CDSP-littoralis_Contig14 674265..674372 +
1680789650.672487-CDS-P-littoralis_Contig14:675008..6752991680789650.672487-CDS-P-littoralis_Contig14:675008..675299Pylaiella littoralis U1_48CDSP-littoralis_Contig14 675009..675299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789650.681533-UTR-P-littoralis_Contig14:675299..6753871680789650.681533-UTR-P-littoralis_Contig14:675299..675387Pylaiella littoralis U1_48UTRP-littoralis_Contig14 675300..675387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.165.1prot_P-littoralis_Contig14.165.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 674265..675299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.165.1

>prot_P-littoralis_Contig14.165.1 ID=prot_P-littoralis_Contig14.165.1|Name=mRNA_P-littoralis_Contig14.165.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
GSEATAAVDKTKNDRDEPSRDWGDDVVLTLTDTGSVVVTVGGHVVIDQRN
PNEAQKGTWLKRTLRKINPVAKVKNAFRRSRSRRSAGSKINNDDSKRDSI
VSNQYSLHVVADGFEVRLDEEFVWGWDVSTSR*
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mRNA from alignment at P-littoralis_Contig14:674265..675387+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.165.1 ID=mRNA_P-littoralis_Contig14.165.1|Name=mRNA_P-littoralis_Contig14.165.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1123bp|location=Sequence derived from alignment at P-littoralis_Contig14:674265..675387+ (Pylaiella littoralis U1_48)
GGCAGCGAGGCGACTGCGGCGGTCGACAAGACCAAGAACGACAGAGACGA GCCGTCCCGGGACTGGGGCGATGACGTCGTACTGACGCTCACGGACACTG GGAGCGTGGTAAGTCAGTTTAAGCCAAGTCAGAAAAGCCAAGCCGCTGGG GGGGGTAAAACTTGCAATACACACAGACTGCAACAGATTGTGTGTAGAAC AAATATAGTCACGGAAAGAAAGAGGAAAGTGGAGTATAGGTGGTGTGTTT TTGTGGTCATTGTTGTTTAATTTTTGATGGGGGTCTGTGCAGATTTGTTT TGAACGGGTGTGTTTGATGATAAACAAACACAAACACGGTATGTTGCTGT GTTGGTTACTTCGTATTTTTTTGTGAAGCGGAGCTCGAACCACTTGATGA GTGGCACGGAAACAAGCGACTAGGCAGCGGGAATTCGAGGAAAGAGCGAG AAAGCGCACCGCCGTAAAGATGTGTACCATACAAAACGCCTACCGCCAGT ATATCCCCTCTGATCGGTATCACTTTGATTCATGTGCGTGTTGCAATGTT GTTTATCTTCCACCATCAATGTGCAGCACCAAACGCGCAAACCATTATAT CTTACTGTCCCAACCCCTCGACCACACGGTTTACGACGGCCCGCTGAAAG CACCGCCGTTTTGAAGCAACCACGACGAGCATCATCTGCTTTTTCATCTT CACACCTTTGTCATGATCGTACGTTTCAATATCACCCTACCCAGGTGGTC ACAGTCGGCGGCCACGTGGTCATCGACCAACGCAACCCGAACGAGGCGCA GAAGGGGACGTGGCTGAAGAGAACTCTGCGCAAGATCAACCCCGTCGCAA AGGTCAAGAACGCCTTCCGCCGATCCCGTTCTCGCCGCAGCGCCGGTAGC AAAATCAACAACGACGACAGCAAACGGGACAGCATCGTCAGCAACCAGTA CTCGCTTCACGTGGTTGCAGACGGGTTCGAGGTCCGACTAGACGAGGAGT TCGTGTGGGGGTGGGATGTTTCTACATCGAGATGACCGCCCGGCACGTGC GTCTCATTCTTCTTGTAGAGTGTCGGCAATATCTCCTCTATATAATAGTA TTGTTTTTTTAGCGCGGCCTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:674265..675387+

>mRNA_P-littoralis_Contig14.165.1 ID=mRNA_P-littoralis_Contig14.165.1|Name=mRNA_P-littoralis_Contig14.165.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig14:674265..675387+ (Pylaiella littoralis U1_48)
GGCAGCGAGGCGACTGCGGCGGTCGACAAGACCAAGAACGACAGAGACGA
GCCGTCCCGGGACTGGGGCGATGACGTCGTACTGACGCTCACGGACACTG
GGAGCGTGGTGGTCACAGTCGGCGGCCACGTGGTCATCGACCAACGCAAC
CCGAACGAGGCGCAGAAGGGGACGTGGCTGAAGAGAACTCTGCGCAAGAT
CAACCCCGTCGCAAAGGTCAAGAACGCCTTCCGCCGATCCCGTTCTCGCC
GCAGCGCCGGTAGCAAAATCAACAACGACGACAGCAAACGGGACAGCATC
GTCAGCAACCAGTACTCGCTTCACGTGGTTGCAGACGGGTTCGAGGTCCG
ACTAGACGAGGAGTTCGTGTGGGGGTGGGATGTTTCTACATCGAGATGA
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