mRNA_P-littoralis_Contig14.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.106.1
Unique NamemRNA_P-littoralis_Contig14.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.106.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.220e-18
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS--CRQPARKGVSKQVGSDNMFSLQELSELFA 326
            L+ R+ +VL+PNPF+RNGVS++L +     + S+  LR+E HDP G AM  RGV  +KLF++F GVLSA++ S     P RK + K  G D +F++ E   LFA
Sbjct:  201 LYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPPRKHL-KVAGPDRLFTMAEARSLFA 303
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BLAST of mRNA_P-littoralis_Contig14.106.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.510e-16
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVSCRQPARKGVSKQVG 281
            L+ R+ +VL+PNPF+RNGVS++L +     + S+  LR+E HDP G AM  RGV  +KLF++F GVLSA++ S   P  +     +G
Sbjct:  190 LYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPRDADASLG 276
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BLAST of mRNA_P-littoralis_Contig14.106.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.310e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:   21 LFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS 239
            L+ R+ +VL+P PF+RNGVS+ L       + S+  LR+E HD    AM  RGV  +K F++F GVLSA++ S
Sbjct:  373 LYDRVVEVLLPTPFDRNGVSAKLHGIAYETTSSLGPLRMEWHDLLEEAMARRGVTAEKFFRKFVGVLSARNAS 445
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J849_9PHAE1.220e-1846.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH2_9PHAE7.510e-1644.83RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KZY5_9PHAE1.310e-1045.21Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:424767..425185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size419
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789649.1147563-UTR-P-littoralis_Contig14:424766..4247771680789649.1147563-UTR-P-littoralis_Contig14:424766..424777Pylaiella littoralis U1_48UTRP-littoralis_Contig14 424767..424777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789649.1257267-CDS-P-littoralis_Contig14:424777..4251851680789649.1257267-CDS-P-littoralis_Contig14:424777..425185Pylaiella littoralis U1_48CDSP-littoralis_Contig14 424778..425185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.106.1prot_P-littoralis_Contig14.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 424778..425185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.106.1

>prot_P-littoralis_Contig14.106.1 ID=prot_P-littoralis_Contig14.106.1|Name=mRNA_P-littoralis_Contig14.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
MRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGV
AMVSRGVETQKLFKEFAGVLSAQSVSCRQPARKGVSKQVGSDNMFSLQEL
SELFASKQSLAAFTAGRVAPMVRDTKVAAVAPLGYI
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mRNA from alignment at P-littoralis_Contig14:424767..425185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.106.1 ID=mRNA_P-littoralis_Contig14.106.1|Name=mRNA_P-littoralis_Contig14.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=419bp|location=Sequence derived from alignment at P-littoralis_Contig14:424767..425185+ (Pylaiella littoralis U1_48)
CCGAGGCGGACATGCGCCACCTGTTCTCTCGTCTCACGGACGTGCTGATG
CCCAACCCTTTCGAACGCAACGGTGTGTCTAGCCTGCTACTGCAACACAC
TCAGCGTGTCTCTGAATCCATGCGTAAACTGCGTCTCGAATTGCACGATC
CAACGGGTGTAGCGATGGTGAGCAGGGGGGTAGAAACGCAAAAGCTCTTC
AAAGAGTTCGCGGGTGTCTTGTCTGCACAGAGTGTATCTTGCAGGCAGCC
CGCTCGGAAAGGCGTTAGCAAGCAGGTTGGTTCGGACAACATGTTCTCTC
TGCAGGAGCTTTCCGAGTTGTTTGCGTCGAAGCAGTCGTTAGCAGCGTTC
ACAGCTGGCCGCGTAGCACCCATGGTTAGAGACACCAAGGTCGCTGCCGT
GGCGCCTCTCGGCTACATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:424767..425185+

>mRNA_P-littoralis_Contig14.106.1 ID=mRNA_P-littoralis_Contig14.106.1|Name=mRNA_P-littoralis_Contig14.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig14:424767..425185+ (Pylaiella littoralis U1_48)
ATGCGCCACCTGTTCTCTCGTCTCACGGACGTGCTGATGCCCAACCCTTT
CGAACGCAACGGTGTGTCTAGCCTGCTACTGCAACACACTCAGCGTGTCT
CTGAATCCATGCGTAAACTGCGTCTCGAATTGCACGATCCAACGGGTGTA
GCGATGGTGAGCAGGGGGGTAGAAACGCAAAAGCTCTTCAAAGAGTTCGC
GGGTGTCTTGTCTGCACAGAGTGTATCTTGCAGGCAGCCCGCTCGGAAAG
GCGTTAGCAAGCAGGTTGGTTCGGACAACATGTTCTCTCTGCAGGAGCTT
TCCGAGTTGTTTGCGTCGAAGCAGTCGTTAGCAGCGTTCACAGCTGGCCG
CGTAGCACCCATGGTTAGAGACACCAAGGTCGCTGCCGTGGCGCCTCTCG
GCTACATT
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