mRNA_P-littoralis_Contig14.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.15.1
Unique NamemRNA_P-littoralis_Contig14.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.170e-50
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSLP 251
            MGGGRHFHFPKHVWSP+GGWW NPP+WKRNTGFAFVGIGLAFIAIARISS+RERRPI PAFHIPSQRWCKHAKEDDPSLP
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 80
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 116 bits (290), Expect = 2.840e-28
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
            MGGG  ++ PK VWSP+GGWW NP NWKRNTG A   +G+  + + ++SS RERRPIPP +HIPSQ WCKHA EDDP L
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A7S2BVW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVW4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.190e-28
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:    9 TMGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
             +GGG H+H+P HVW+P+GGWW NPPNWKRN G AF  +G +   I+ +S++ ERRP+PP  +IPSQ WCK+A  DDP L
Sbjct:   21 VLGGGGHYHYPAHVWTPAGGWWVNPPNWKRNLGIAFGFLGFSLYNISSLSTKLERRPMPPKNYIPSQGWCKNAAADDPDL 100
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.760e-27
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
            MGGGR FH+PK+VWSP+GGWW  P  W+RNT  AF  I L  +A+  +S + ERRP+ P  HIPSQ WC HA+EDDPSL
Sbjct:    1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 79
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.470e-27
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
            MGGGR F+FP H+W+PSGGW+ NP NW+ NT     GIG+A  +   +S+  ERRPI PA+HIPSQ WCKHA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 112 bits (279), Expect = 1.420e-26
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSLP 251
            MGG + F +PK+VWSP+GGWW NP NWKRNT  AF  I    I +  IS   ERR +PP  HIPSQR+CKHAKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSLP 80
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: UPI0013901F45 (uncharacterized protein LOC116613693 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901F45)

HSP 1 Score: 108 bits (271), Expect = 4.060e-25
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 3 
Query:    9 TMGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSLP 251
             MGGG+ F +PK VWSPSGGWW NP NW+RNT  AF       I +A I+ + ERRP+PP  HIPSQR  K+AK DDPSLP
Sbjct:   25 NMGGGKKFAYPKFVWSPSGGWWCNPKNWRRNTLIAFGVYAAICIPVAYIALQLERRPVPPYRHIPSQRLAKYAKVDDPSLP 105
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 107 bits (268), Expect = 4.170e-25
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 3 
Query:   15 GGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
            GG + F +PK+VWSPSGGWW NP +W+RNT    + + L+ I +A IS++ ERRP+ P  HIPSQRWCK+A+ DDPSL
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSL 78
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BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI)

HSP 1 Score: 106 bits (265), Expect = 1.400e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAF-VGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSLP 251
            MGG + F +PK+VWSP+GGWW NP NWKRNT   F V +GL  I +A +S  RERR +PP  HIPSQR+ ++AKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQ-IPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLP 80
[Close]
BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 104 bits (260), Expect = 5.390e-24
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:   12 MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISSERERRPIPPAFHIPSQRWCKHAKEDDPSL 248
            MGGG+ F +PK+VWSPSGGWW  P NW+RNT   F  I  A + I  +S + ERRP+ P  HI SQR+ KHAKEDDPSL
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSL 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G068_ECTSI3.170e-5093.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JPC4_FISSO2.840e-2863.29Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2BVW4_9STRA4.190e-2857.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YUQ9_9STRA1.760e-2760.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DFY8_9STRA7.470e-2760.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI001CF0F2211.420e-2663.75uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
UPI0013901F454.060e-2560.49uncharacterized protein LOC116613693 n=1 Tax=Nemat... [more]
A0A1X7UGN9_AMPQE4.170e-2557.69Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A2B4SQG4_STYPI1.400e-2461.73Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
A0A6S7H709_PARCT5.390e-2459.49Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:74379..76455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15716111
Model size1320
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.05e-30
EggNOG OGs2CGJ1@1|root,2S6YK@2759|Eukaryota,3A92W@33154|Opisthokonta,3C3J4@33208|Metazoa
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004010.1
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.4102345-UTR-P-littoralis_Contig14:74378..743891680789646.4102345-UTR-P-littoralis_Contig14:74378..74389Pylaiella littoralis U1_48UTRP-littoralis_Contig14 74379..74389 +
1680789646.4457185-UTR-P-littoralis_Contig14:75389..764551680789646.4457185-UTR-P-littoralis_Contig14:75389..76455Pylaiella littoralis U1_48UTRP-littoralis_Contig14 75390..76455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.4226718-CDS-P-littoralis_Contig14:74389..745481680789646.4226718-CDS-P-littoralis_Contig14:74389..74548Pylaiella littoralis U1_48CDSP-littoralis_Contig14 74390..74548 +
1680789646.4356887-CDS-P-littoralis_Contig14:75305..753891680789646.4356887-CDS-P-littoralis_Contig14:75305..75389Pylaiella littoralis U1_48CDSP-littoralis_Contig14 75306..75389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.15.1prot_P-littoralis_Contig14.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 74390..75389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.15.1

>prot_P-littoralis_Contig14.15.1 ID=prot_P-littoralis_Contig14.15.1|Name=mRNA_P-littoralis_Contig14.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MGGGRHFHFPKHVWSPSGGWWANPPNWKRNTGFAFVGIGLAFIAIARISS
ERERRPIPPAFHIPSQRWCKHAKEDDPSLP*
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mRNA from alignment at P-littoralis_Contig14:74379..76455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.15.1 ID=mRNA_P-littoralis_Contig14.15.1|Name=mRNA_P-littoralis_Contig14.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2077bp|location=Sequence derived from alignment at P-littoralis_Contig14:74379..76455+ (Pylaiella littoralis U1_48)
CAGCAGCAACCATGGGGGGGGGACGACACTTCCACTTCCCCAAGCACGTA
TGGTCGCCCTCGGGAGGGTGGTGGGCCAACCCGCCCAACTGGAAGCGCAA
CACAGGGTTCGCGTTCGTCGGCATCGGATTGGCGTTCATCGCGATCGCCC
GTATTTCCTCCGAACGGGAGGTGAGCAATAATTATTCTTCTTGGTTGCTT
CTTTGCACGGTCGATGTGCGGGCCGGGAGTGCACGGGACAAGCTATCATA
CTGCTACTGCTGGCGGTGTGCATAAAACACGGACTGCTGCTGCTGCTGCT
GCCACTGTGATGTGAAACGCGTGTCCGACCCTGGGCGCACAACTCACAGT
GGTCGTTTGCTTGAAGTTAGACGTACGCATACACTCACCCACACACCCCC
ACACTCACACAAAGGCGGGGCCTGTAGTGGGCATCGGCAGGCGAACCGCT
GGCGGGCAGCCTCACCTCCCTGTCAAGTCACACCTTCAGAACGTGGGGTT
GCTGGGCGACTCCGTGGTGCTGCTGGTGCTGCTGGTGCTGCTGCTAGTTG
GTGTTGGTTCTGTGTTTGTTTTCAATCTAATTGGCACCGTGTATGTTTTG
TGACCCCATGATTGAGAGAGATTTGGTTGGATCGCGTCTGGAGATGCATA
TGGTCCCTCCCGCGAGCCAAGAAAGAAATTCATCGGAACCTCTACACGCT
TGTCCCCTGTTGAGTTTCCCACCACCTCTTGTACACGAGGGGCAAATAGG
CCAATAACCCACCAAACATGCCATGCCACGTGGTGATGAAGCACGCACGG
CGAATACATAGCAGCCTAAGCTTGTTTGAGGCGTTTCCGGTTGCGTGTGT
TGCGGCGGTAGCTGACCCTCCCCCCCCCCACCCACCCCTGTTCTCGTCGT
CTTTTGTCTTGCTTTCTTTTCGGTCAGCGCCGGCCGATCCCTCCGGCTTT
CCACATCCCTTCCCAGAGGTGGTGCAAGCACGCGAAGGAGGACGACCCTT
CTCTGCCGTAGACACAACTTGAATGATCGGGGCTTACACTTGTTTTCGCT
CACGTGTTTGAGTTGCTGCGTCCTTCTTTTTTGAGGTGTACGATAGACCT
TGACCGCTGGTGGTCTTTTGAAATTCGGAAGTGTCTGCTGCTGCTGTGTC
TCGCTCATTGCTGGCCCTCGTTTTGCCGAGGGAAATCCATTGTTGGGTGC
GAGGCGGGGGGGTACTTATCTTGAAGCCAAAGTAAAACTGACAGTAGAGC
AAAAGGAAAGAAGGGACTTAGTTTTTGTATTGTGTGGCACACGCGTGCCT
GGCACCTGGGTTGGACGGTGCCGGTTAAACGCGAAAAGTTTGTTGCTGTG
GCCCGTTTGGCTGGCTACGAATGGATGGCAAAATAAGCAACAGCAGCAAC
AAGCAGTAGACTGGCATATCATGAGGAGGGATTAGTCCTCACGCCGTTTC
GTCGTCACGTAACGAACATGCGGCAACGCACAAGGCGCTGTCGCCCCGTT
TTTATTTTCCTCTCTCCGATTATGATTTGCTGCAGCCGAAAAAGTCAGAG
ATTTGCAATTTTTCAACTGCTGATGTGAGCGCAGAAACGTCCTTGGTCTT
GACACTATCTATGCTGTTGCTCGGACTTGGCTGAGTAGGCGTGTCTCGTC
GATATCTCGCGGCAGCTAACTGTGTACCGTACGAAGCATGCATCATGTCG
TGACGATAATAAACAATGGGGCGAAGGTACCTGGTGTGTACACGGGTGAC
GGCAGTTGGTTGGTTTCAGTCTTAGTTCATCGGGCATATGTCGATGAACT
CGCCAGGTACAGTCACCAGCGACGAACGATGCTTGCGTTTGGGATAAGTA
ATTTTGCTCAGGTCGAAGGGGGAGAAGCCTGTCTTCAAAGCTCGCGACAT
CGCCGGTAATTGCCTCAGTGCGAAAAAAAATTCCACACGGGTATTTCCTA
AGGGATGGCACGTGGCAGTCTCCTAATCTTCAGCTGCATGATGATATGGC
GCCCCATTCCGGCTGTCCGACATAAAATTGCGTGGCATTATGTGACCTCC
ATCAAACCTTTCTTGAGCAAAAAAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:74379..76455+

>mRNA_P-littoralis_Contig14.15.1 ID=mRNA_P-littoralis_Contig14.15.1|Name=mRNA_P-littoralis_Contig14.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig14:74379..76455+ (Pylaiella littoralis U1_48)
ATGGGGGGGGGACGACACTTCCACTTCCCCAAGCACGTATGGTCGCCCTC
GGGAGGGTGGTGGGCCAACCCGCCCAACTGGAAGCGCAACACAGGGTTCG
CGTTCGTCGGCATCGGATTGGCGTTCATCGCGATCGCCCGTATTTCCTCC
GAACGGGAGCGCCGGCCGATCCCTCCGGCTTTCCACATCCCTTCCCAGAG
GTGGTGCAAGCACGCGAAGGAGGACGACCCTTCTCTGCCGTAG
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