mRNA_P-littoralis_Contig14.271.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.271.1
Unique NamemRNA_P-littoralis_Contig14.271.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:1076575..1077684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1110
Hectar predicted targeting categoryother localisation
Exons1
Cds size939
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.2189736-CDS-P-littoralis_Contig14:1076574..10775131680789646.2189736-CDS-P-littoralis_Contig14:1076574..1077513Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1076575..1077513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789646.228959-UTR-P-littoralis_Contig14:1077513..10776841680789646.228959-UTR-P-littoralis_Contig14:1077513..1077684Pylaiella littoralis U1_48UTRP-littoralis_Contig14 1077514..1077684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.271.1prot_P-littoralis_Contig14.271.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 1076575..1077513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.271.1

>prot_P-littoralis_Contig14.271.1 ID=prot_P-littoralis_Contig14.271.1|Name=mRNA_P-littoralis_Contig14.271.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=313bp
MDPKAPSAHSRNPTAIVEGAGGGILPHLAASASDASVDPFVLSYRAPAAA
EPALTGVSRTTSSTRGTCSVSPQTLAQAQAFHASGVRRNEPQAGWRSRNF
LAAAGVGAGQATTTTIGTTSTAPGSISTGSVQQAARRSVPLPVAVGSSNR
NSDGRHKVWAGGEYSNVALGSHSFLATAVQNSRAPVASGQFGTLRRSSNV
VGAEFSAPGTSILSAIQEAARPTACRYPESAAAASGPGVGWRAGRAGATR
AAAGVPGPPSAIPPAQLLSGGVGAGLLQPHVGAAYAGTAGPVGQRRPMLM
GAVGAAAVGLPAS
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mRNA from alignment at P-littoralis_Contig14:1076575..1077684-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.271.1 ID=mRNA_P-littoralis_Contig14.271.1|Name=mRNA_P-littoralis_Contig14.271.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig14:1076575..1077684- (Pylaiella littoralis U1_48)
GGCCTCTGGCCTGCGTTCTGCGTTCCGCCTGATTCCGCCGCTCGCCGCGG
GACGTATTAGCGCTGCTGTTGTGCTCTGTGCTACAGCACGTGTGCTGCTA
CCAGTGCTGTTGTCTTGGCGTGGTGCGCCCCTGGCACTTGAGTCTCAACG
GGTGCGCCCGTTGAGAAGACCATGGACCCCAAGGCTCCCAGCGCCCATAG
CCGGAACCCGACTGCCATTGTGGAAGGAGCGGGCGGTGGGATCCTCCCCC
ATTTGGCTGCCTCTGCTTCTGATGCATCTGTGGATCCTTTTGTTCTCAGT
TACCGGGCTCCGGCAGCAGCAGAACCGGCTCTCACCGGTGTTTCACGCAC
GACCAGTAGTACTAGGGGTACTTGCAGCGTCTCCCCGCAAACATTGGCAC
AAGCACAAGCATTCCACGCGTCTGGAGTTCGTAGAAATGAACCACAAGCC
GGCTGGCGTTCGCGCAATTTTTTGGCGGCCGCCGGGGTTGGAGCAGGCCA
GGCAACGACAACCACCATTGGCACCACCTCAACAGCGCCAGGAAGCATTT
CAACCGGGAGTGTCCAACAGGCAGCGAGACGGTCGGTCCCACTGCCCGTG
GCGGTGGGGAGTTCTAACCGAAACAGTGATGGAAGGCACAAGGTGTGGGC
CGGCGGTGAATATTCCAACGTCGCCCTTGGAAGTCATTCGTTTTTGGCCA
CTGCTGTGCAAAATTCCCGGGCTCCGGTGGCATCGGGGCAATTTGGGACT
CTGCGAAGGTCTTCCAATGTTGTAGGTGCTGAATTTTCGGCACCGGGCAC
GTCCATCTTGTCTGCTATTCAGGAGGCGGCCAGACCTACGGCATGTAGAT
ATCCCGAAAGTGCCGCAGCGGCTTCCGGCCCGGGGGTGGGCTGGCGAGCA
GGTAGAGCCGGAGCCACCAGAGCCGCGGCGGGTGTGCCGGGACCACCCTC
TGCAATTCCACCCGCACAGCTGTTGTCCGGCGGAGTAGGGGCGGGATTAC
TGCAGCCTCACGTGGGAGCGGCTTACGCTGGAACAGCTGGACCTGTGGGT
CAGCGTCGACCAATGTTGATGGGCGCAGTGGGCGCAGCTGCAGTGGGGCT
ACCGGCTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:1076575..1077684-

>mRNA_P-littoralis_Contig14.271.1 ID=mRNA_P-littoralis_Contig14.271.1|Name=mRNA_P-littoralis_Contig14.271.1|organism=Pylaiella littoralis U1_48|type=CDS|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig14:1076575..1077684- (Pylaiella littoralis U1_48)
ATGGACCCCAAGGCTCCCAGCGCCCATAGCCGGAACCCGACTGCCATTGT
GGAAGGAGCGGGCGGTGGGATCCTCCCCCATTTGGCTGCCTCTGCTTCTG
ATGCATCTGTGGATCCTTTTGTTCTCAGTTACCGGGCTCCGGCAGCAGCA
GAACCGGCTCTCACCGGTGTTTCACGCACGACCAGTAGTACTAGGGGTAC
TTGCAGCGTCTCCCCGCAAACATTGGCACAAGCACAAGCATTCCACGCGT
CTGGAGTTCGTAGAAATGAACCACAAGCCGGCTGGCGTTCGCGCAATTTT
TTGGCGGCCGCCGGGGTTGGAGCAGGCCAGGCAACGACAACCACCATTGG
CACCACCTCAACAGCGCCAGGAAGCATTTCAACCGGGAGTGTCCAACAGG
CAGCGAGACGGTCGGTCCCACTGCCCGTGGCGGTGGGGAGTTCTAACCGA
AACAGTGATGGAAGGCACAAGGTGTGGGCCGGCGGTGAATATTCCAACGT
CGCCCTTGGAAGTCATTCGTTTTTGGCCACTGCTGTGCAAAATTCCCGGG
CTCCGGTGGCATCGGGGCAATTTGGGACTCTGCGAAGGTCTTCCAATGTT
GTAGGTGCTGAATTTTCGGCACCGGGCACGTCCATCTTGTCTGCTATTCA
GGAGGCGGCCAGACCTACGGCATGTAGATATCCCGAAAGTGCCGCAGCGG
CTTCCGGCCCGGGGGTGGGCTGGCGAGCAGGTAGAGCCGGAGCCACCAGA
GCCGCGGCGGGTGTGCCGGGACCACCCTCTGCAATTCCACCCGCACAGCT
GTTGTCCGGCGGAGTAGGGGCGGGATTACTGCAGCCTCACGTGGGAGCGG
CTTACGCTGGAACAGCTGGACCTGTGGGTCAGCGTCGACCAATGTTGATG
GGCGCAGTGGGCGCAGCTGCAGTGGGGCTACCGGCTTCA
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