mRNA_P-littoralis_Contig14.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.58.1
Unique NamemRNA_P-littoralis_Contig14.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:275834..277133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1300
Hectar predicted targeting categoryother localisation
Exons1
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.9631515-UTR-P-littoralis_Contig14:275833..2759751680789645.9631515-UTR-P-littoralis_Contig14:275833..275975Pylaiella littoralis U1_48UTRP-littoralis_Contig14 275834..275975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.9756098-CDS-P-littoralis_Contig14:275975..2771331680789645.9756098-CDS-P-littoralis_Contig14:275975..277133Pylaiella littoralis U1_48CDSP-littoralis_Contig14 275976..277133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.58.1prot_P-littoralis_Contig14.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 275976..277133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.58.1

>prot_P-littoralis_Contig14.58.1 ID=prot_P-littoralis_Contig14.58.1|Name=mRNA_P-littoralis_Contig14.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=386bp
MWSGGRPSQNAGAADGGASPPGKGKRNGGGGLPRAGTGDERPRSPGLDDD
KALSEEGGGRGRKKQRGLSPVPPPRPWNFAGNAEARRRQQQLQQPAGTTA
VVASKKGAVATSAGKVAGAAGGGGSGGGGKSVGHGWRAAADGSRKGGVAG
EGDDGGGSVPTSSGYGRSASASVVGGVAASASARAGGIPRSGSALELRGQ
QQSLSHRVETAAATAGPAPRGLESGRGGGGGGTGAGSPSDDEANDVGVGP
GGGGGGVETSFPSSFSARAASAAPRGTSTAVGEETRGHEGGRKSSSLSAA
AAAAGPAAGGGSRPANIIRIRIPPTSSSGQQQQQQQVRPVGRPPKAGRLS
NDRETPGPVRVTSSSSSSSGRIRSAALSLGGGRTPP
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mRNA from alignment at P-littoralis_Contig14:275834..277133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.58.1 ID=mRNA_P-littoralis_Contig14.58.1|Name=mRNA_P-littoralis_Contig14.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1300bp|location=Sequence derived from alignment at P-littoralis_Contig14:275834..277133+ (Pylaiella littoralis U1_48)
GCAGGAGGAGAAAGAATACCGGGGGATCACAACAACAAAAAAAAACGAGT
GATAAAAAAAAAATAACTAGAGCAACGCATAGGATAGTATCAGACCGCGG
GAAAGAGTGTAATCTCGAGCTCTTGATTGGATCTGCGCACAAATGTGGAG
TGGAGGGAGGCCGTCCCAGAACGCTGGTGCCGCTGACGGCGGCGCCTCGC
CTCCCGGGAAAGGGAAAAGAAACGGAGGAGGCGGTCTTCCACGGGCGGGG
ACGGGAGACGAACGTCCCCGCTCCCCGGGTCTCGATGATGATAAAGCCCT
GTCTGAAGAGGGCGGAGGGCGAGGGAGAAAAAAACAGAGGGGGTTGTCCC
CGGTTCCGCCGCCCAGGCCATGGAACTTTGCTGGCAACGCTGAGGCGCGG
CGGCGGCAGCAGCAGCTGCAGCAACCGGCGGGAACTACTGCTGTGGTGGC
GTCGAAGAAAGGGGCAGTGGCAACTTCGGCTGGTAAGGTAGCGGGTGCTG
CCGGCGGCGGCGGCAGCGGTGGTGGCGGTAAGAGCGTCGGCCATGGATGG
CGCGCGGCGGCTGACGGTAGCCGAAAGGGCGGGGTTGCTGGTGAAGGTGA
CGATGGTGGTGGGTCTGTGCCCACGAGCTCGGGCTATGGGCGGTCCGCTA
GTGCTTCCGTTGTCGGCGGTGTCGCTGCCAGTGCCAGCGCTCGTGCCGGA
GGGATCCCGCGGTCAGGCTCAGCTCTAGAGCTACGGGGACAGCAGCAGTC
GTTGTCACATCGCGTGGAGACTGCTGCTGCTACTGCTGGTCCAGCACCTC
GCGGTTTGGAAAGTGGCCGCGGCGGTGGTGGTGGTGGCACTGGTGCTGGT
AGTCCGAGCGATGACGAGGCCAACGACGTTGGCGTTGGGCCAGGTGGTGG
TGGTGGGGGTGTCGAAACTTCCTTCCCTTCTTCATTTTCCGCTCGTGCTG
CCTCTGCTGCGCCAAGGGGCACATCGACAGCAGTCGGAGAGGAAACTCGA
GGACACGAAGGTGGTCGGAAGTCGTCATCGTTGTCGGCGGCGGCGGCGGC
GGCAGGGCCAGCAGCGGGCGGTGGTAGCAGGCCCGCCAACATAATCAGAA
TCAGAATCCCTCCTACGTCCTCCTCCGGACAGCAGCAACAGCAGCAGCAG
GTAAGACCGGTGGGACGCCCCCCGAAAGCAGGGCGGCTTTCAAACGATAG
GGAAACCCCTGGCCCAGTCCGCGTGACCAGCAGCAGCAGCAGCAGCAGCG
GGAGAATACGAAGCGCTGCCCTTTCGCTAGGTGGAGGTCGCACGCCTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:275834..277133+

>mRNA_P-littoralis_Contig14.58.1 ID=mRNA_P-littoralis_Contig14.58.1|Name=mRNA_P-littoralis_Contig14.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1158bp|location=Sequence derived from alignment at P-littoralis_Contig14:275834..277133+ (Pylaiella littoralis U1_48)
ATGTGGAGTGGAGGGAGGCCGTCCCAGAACGCTGGTGCCGCTGACGGCGG
CGCCTCGCCTCCCGGGAAAGGGAAAAGAAACGGAGGAGGCGGTCTTCCAC
GGGCGGGGACGGGAGACGAACGTCCCCGCTCCCCGGGTCTCGATGATGAT
AAAGCCCTGTCTGAAGAGGGCGGAGGGCGAGGGAGAAAAAAACAGAGGGG
GTTGTCCCCGGTTCCGCCGCCCAGGCCATGGAACTTTGCTGGCAACGCTG
AGGCGCGGCGGCGGCAGCAGCAGCTGCAGCAACCGGCGGGAACTACTGCT
GTGGTGGCGTCGAAGAAAGGGGCAGTGGCAACTTCGGCTGGTAAGGTAGC
GGGTGCTGCCGGCGGCGGCGGCAGCGGTGGTGGCGGTAAGAGCGTCGGCC
ATGGATGGCGCGCGGCGGCTGACGGTAGCCGAAAGGGCGGGGTTGCTGGT
GAAGGTGACGATGGTGGTGGGTCTGTGCCCACGAGCTCGGGCTATGGGCG
GTCCGCTAGTGCTTCCGTTGTCGGCGGTGTCGCTGCCAGTGCCAGCGCTC
GTGCCGGAGGGATCCCGCGGTCAGGCTCAGCTCTAGAGCTACGGGGACAG
CAGCAGTCGTTGTCACATCGCGTGGAGACTGCTGCTGCTACTGCTGGTCC
AGCACCTCGCGGTTTGGAAAGTGGCCGCGGCGGTGGTGGTGGTGGCACTG
GTGCTGGTAGTCCGAGCGATGACGAGGCCAACGACGTTGGCGTTGGGCCA
GGTGGTGGTGGTGGGGGTGTCGAAACTTCCTTCCCTTCTTCATTTTCCGC
TCGTGCTGCCTCTGCTGCGCCAAGGGGCACATCGACAGCAGTCGGAGAGG
AAACTCGAGGACACGAAGGTGGTCGGAAGTCGTCATCGTTGTCGGCGGCG
GCGGCGGCGGCAGGGCCAGCAGCGGGCGGTGGTAGCAGGCCCGCCAACAT
AATCAGAATCAGAATCCCTCCTACGTCCTCCTCCGGACAGCAGCAACAGC
AGCAGCAGGTAAGACCGGTGGGACGCCCCCCGAAAGCAGGGCGGCTTTCA
AACGATAGGGAAACCCCTGGCCCAGTCCGCGTGACCAGCAGCAGCAGCAG
CAGCAGCGGGAGAATACGAAGCGCTGCCCTTTCGCTAGGTGGAGGTCGCA
CGCCTCCC
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