mRNA_P-littoralis_Contig14.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.4.1
Unique NamemRNA_P-littoralis_Contig14.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:9471..11408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1137
Hectar predicted targeting categoryother localisation
Exons2
Cds size867
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.356229-UTR-P-littoralis_Contig14:9470..95821680789645.356229-UTR-P-littoralis_Contig14:9470..9582Pylaiella littoralis U1_48UTRP-littoralis_Contig14 9471..9582 -
1680789645.3881311-UTR-P-littoralis_Contig14:11250..114081680789645.3881311-UTR-P-littoralis_Contig14:11250..11408Pylaiella littoralis U1_48UTRP-littoralis_Contig14 11251..11408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.3665736-CDS-P-littoralis_Contig14:9582..96861680789645.3665736-CDS-P-littoralis_Contig14:9582..9686Pylaiella littoralis U1_48CDSP-littoralis_Contig14 9583..9686 -
1680789645.3801827-CDS-P-littoralis_Contig14:10487..112501680789645.3801827-CDS-P-littoralis_Contig14:10487..11250Pylaiella littoralis U1_48CDSP-littoralis_Contig14 10488..11250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.4.1prot_P-littoralis_Contig14.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 9583..11250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.4.1

>prot_P-littoralis_Contig14.4.1 ID=prot_P-littoralis_Contig14.4.1|Name=mRNA_P-littoralis_Contig14.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MAMSTTAAGGREAFRGDGKGDGNIFGGGVNSIGRWYAEPYHRVSHEGSAS
SPKRPRDTDGGDSDLGGIVPAAGRRGGIVLHGQGGGGRGMEADDKYSAEG
RVGGNRRIKRVKVDFGVGGAQGSGGSSGSSGSSSSCCIASRSNDSGNGGV
IPIASSRSSRSSRSSPSISGGGGDACAKPSSRDASPGRKRTRRSNDDGDG
VNRGGCGMDVNTALGYDDDHKHRVISVRAAGGKDEVFRRTRGSSGQNKRS
RSMKGSRCCRWWWCCCCWGFVSVHHVDSFLNSGPVKHP*
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mRNA from alignment at P-littoralis_Contig14:9471..11408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.4.1 ID=mRNA_P-littoralis_Contig14.4.1|Name=mRNA_P-littoralis_Contig14.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1938bp|location=Sequence derived from alignment at P-littoralis_Contig14:9471..11408- (Pylaiella littoralis U1_48)
CGAGGAGACTGCCACCGATTTCGGGAGGCAAAGCTGCGGTACCGAGGACA
CTCCTTGACGCCGGCAACAGCGGTAGCGGCGGCGGCGATGGCGGTGGCGG
AGGTCGTACTGATGGTAGGGAGGCTTTGCCTGTTCCGGTCGACACGGGCA
AGAGGGCTATGGCCATGAGCACGACGGCAGCTGGTGGAAGGGAAGCGTTT
CGAGGCGACGGCAAGGGGGATGGAAACATATTCGGCGGTGGCGTGAACAG
TATTGGAAGATGGTATGCCGAGCCTTACCACCGCGTCAGCCATGAAGGGT
CGGCTTCGTCGCCCAAGCGGCCACGGGATACGGACGGCGGTGATTCAGAC
CTTGGCGGGATAGTCCCAGCTGCCGGTAGAAGGGGTGGAATCGTGCTCCA
CGGGCAAGGAGGAGGCGGGCGTGGGATGGAGGCCGACGATAAGTACTCGG
CGGAGGGAAGGGTCGGAGGCAATCGCCGGATCAAACGGGTGAAGGTTGAC
TTCGGTGTAGGAGGAGCACAAGGCAGCGGTGGAAGCAGCGGGAGCAGCGG
GAGTAGCAGCAGCTGCTGTATAGCCAGCAGGAGCAACGACAGCGGCAACG
GCGGTGTCATCCCTATCGCCAGCAGTCGCAGCAGTCGCAGCAGTCGCAGC
AGTCCCAGCATCAGCGGCGGTGGCGGCGATGCCTGTGCCAAGCCATCATC
TCGCGATGCCAGTCCCGGCCGGAAACGGACGAGGAGAAGCAACGATGATG
GTGACGGGGTCAACAGAGGAGGTTGCGGCATGGACGTGAACACCGCGCTT
GGCTATGATGATGACCATAAGCACCGTGTTATCAGCGTCCGTGCCGCTGG
CGGAAAGGACGAGGTGTTCCGGAGAACGCGCGGCTCTAGCGGGCAGAACA
AGCGATCCCGGAGCATGAAAGGTGAGACTCAGCAGAATACCCGTCAATTT
CCTCTGATGTTCTCGGGGTTGTTGCTGTTGTTAGCGCGCTGCGCGAAGCG
GGAGGAGGACAAAAGTGCCTTGGACTTAGCTTGATAACCCCCTCACCGTC
TGAAGGAAGACTGAACAGGAAGTACACGTGAATCCTCTATGTTGGCACAA
AGCTGTATCATCTGAGGCTCTGGTCCATGGGGCTTTATTTGATCTCAATG
AAGTCCCTTGGTAGCGAGCGACGATAGGGGAAGAAATAAACGGCGGGTTA
GTTGAGCTGTGGCACGATTGCTGCCTCACTGCCGTTGATGATGTCGTCTT
TGTGCGATTTGCTGTACGACGATTTGTATACCCTCTACATCCGCTACAGC
AGTAGTTTACGCACAACAAAATGACTCGGTGTGTCTTATTATTTTTTTGT
GCACGGTAGCCTTGGGTGTCGGAGAAACCACGGGCTCTACATACCTTCTC
AAGTCTGCTACCGCTAGCCTGACCCCCCCCCCTACTTCCCCGCGATGTAT
TGTTCTGCTGCCGCCCGCCCACAGTCTCGTGATAAAGTCTCGTGACAAAA
GTCTCAAAGAGAGCTTATGGTAGCGGCACAAGCGCCCCACCAGCGCGGGT
TAGCTTTCCTCTACCATCTTCCGTGGATGACCAGCACACCTGTGAAAAGC
ATTATCCTCGAGACGGTGCTTCAGTAAACACGTTTACCCTTGGGAAGGAA
GCGTGTTGTCGCCCTTACCTTGAAGGATTTCGTGGTTGAGCATCAAAGGG
GACGACTTTGATTGTGCGGTAGGTTCTCGTTGTTGTCGGTGGTGGTGGTG
TTGTTGCTGTTGGGGATTTGTTTCTGTTCATCACGTCGATTCGTTTCTCA
ACTCTGGCCCTGTCAAACACCCGTGATACTGCATGTGTATTTTTGTGTCG
AACTTCGAACAACGCCTTTGGTGTGTACCACAGGGTCAACCAGAACAATA
TTGTCGAGAGGGTTGACGTAGAGGATGTTTGTACCAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:9471..11408-

>mRNA_P-littoralis_Contig14.4.1 ID=mRNA_P-littoralis_Contig14.4.1|Name=mRNA_P-littoralis_Contig14.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig14:9471..11408- (Pylaiella littoralis U1_48)
ATGGCCATGAGCACGACGGCAGCTGGTGGAAGGGAAGCGTTTCGAGGCGA
CGGCAAGGGGGATGGAAACATATTCGGCGGTGGCGTGAACAGTATTGGAA
GATGGTATGCCGAGCCTTACCACCGCGTCAGCCATGAAGGGTCGGCTTCG
TCGCCCAAGCGGCCACGGGATACGGACGGCGGTGATTCAGACCTTGGCGG
GATAGTCCCAGCTGCCGGTAGAAGGGGTGGAATCGTGCTCCACGGGCAAG
GAGGAGGCGGGCGTGGGATGGAGGCCGACGATAAGTACTCGGCGGAGGGA
AGGGTCGGAGGCAATCGCCGGATCAAACGGGTGAAGGTTGACTTCGGTGT
AGGAGGAGCACAAGGCAGCGGTGGAAGCAGCGGGAGCAGCGGGAGTAGCA
GCAGCTGCTGTATAGCCAGCAGGAGCAACGACAGCGGCAACGGCGGTGTC
ATCCCTATCGCCAGCAGTCGCAGCAGTCGCAGCAGTCGCAGCAGTCCCAG
CATCAGCGGCGGTGGCGGCGATGCCTGTGCCAAGCCATCATCTCGCGATG
CCAGTCCCGGCCGGAAACGGACGAGGAGAAGCAACGATGATGGTGACGGG
GTCAACAGAGGAGGTTGCGGCATGGACGTGAACACCGCGCTTGGCTATGA
TGATGACCATAAGCACCGTGTTATCAGCGTCCGTGCCGCTGGCGGAAAGG
ACGAGGTGTTCCGGAGAACGCGCGGCTCTAGCGGGCAGAACAAGCGATCC
CGGAGCATGAAAGGTTCTCGTTGTTGTCGGTGGTGGTGGTGTTGTTGCTG
TTGGGGATTTGTTTCTGTTCATCACGTCGATTCGTTTCTCAACTCTGGCC
CTGTCAAACACCCGTGA
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