mRNA_P-littoralis_Contig1396.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1396.8.1
Unique NamemRNA_P-littoralis_Contig1396.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KKK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.220e-29
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM KLL   P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E  +  R    A D   ++    V  T+E+L +V+ ++F  L NMDQT +Q EMP +TT+EKTG
Sbjct:   97 VMDKLLEMKPDALGGMPANAKPEEALALKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGHEGMAWATVMKLRETLSKRAGE--IYARRHPPAPDESPIK---GVDLTSEQLASVEAEVFEELGNMDQTQVQHEMPVETTLEKTG 236          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.770e-29
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM KLL   P   GGMP+  +PE+   F+  FN WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+EKTG
Sbjct:  123 VMNKLLELKPDALGGMPANAKPEEALAFKVNFNPWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVKAEVFEELGNMDQTPVQHEMPVETTLEKTG 262          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5JCV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.710e-29
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM K+L   P   GGMP+  +PE+   F+ +FN+WY RF KRH  SIRR+TSVGQK P+G+EG AWA + KLR +L + A E +   R   A  +  T   ++    T+E+L +V+ ++F  L NMDQTP+Q EMP +TT++KTG
Sbjct:  222 VMNKVLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRHGSSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLDKTG 361          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5JAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.200e-28
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KRH  SIR++TSVGQK P+G+EG AWA + KLR +L + A E +   R   A  +  T   ++    T+E+L +V+ ++F  L NMDQTP+Q EMP +TT++KTG
Sbjct:  168 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRHGSSIRQRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLDKTG 307          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.730e-28
Identity = 71/145 (48.97%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM KLL   P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+EKTG
Sbjct:  182 VMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTG 321          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.440e-28
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSV QK P+G+EG AWA + KLR +L + A E  +  R    A +   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+EKTG
Sbjct:  211 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVAQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPEESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTG 350          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KFQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.300e-28
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            V+ KLL   P   GGMP+  +PE+   F+ +FN+WY +F KR+ FSIRR+TSVGQK P+G+EG AWA +  LR +L + A    +  R    A D   ++ E D+  T E+L +V+ ++F  L NMDQTP+Q EMP +TT+EKTG
Sbjct:  186 VINKLLQLKPDALGGMPANAKPEEALAFKIKFNSWYQQFRKRNGFSIRRRTSVGQKLPKGYEGTAWATVMNLREALVQRA--GAIHARRNPPAPDESPIKGE-DL--TCEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTG 325          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.420e-28
Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            M KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q E+P +TT+EKTG
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTG 139          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5L6D5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.830e-28
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            M KLL   P   GGMP+  +PE+   F+ +FN+WY  F KR+ FSIRR+TSVGQK P+G+EG A A + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ K+F  L NMDQTP+Q EMP + T+EK G
Sbjct:    1 MNKLLQLKPDTLGGMPANAKPEEALAFKVKFNSWYQWFRKRNGFSIRRRTSVGQKLPKGYEGVAGATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAKVFEELGNMDQTPVQHEMPVENTLEKAG 139          
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Match: A0A6H5KMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.120e-28
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG 435
            M KLL   P   GGMP+  +PE    F+  FN+WY RF  R+ FSIRR+TSV +K P+G+EG AWA + KLR +L E A E  +  R    A D   ++ E D+  T+E+L +V+  +F  L NMDQ P+Q EMP +TT+EK G
Sbjct:    1 MNKLLELKPDVLGGMPANAKPEDALAFKIEFNSWYQRFRMRNGFSIRRRTSVDKKLPKGYEGMAWATVMKLREALVERAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEADVFEELGNMDQLPVQDEMPVETTLEKAG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1396.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK4_9PHAE1.220e-2947.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN9_9PHAE2.770e-2949.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCV1_9PHAE9.710e-2946.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU0_9PHAE1.200e-2846.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ8_9PHAE1.730e-2848.97DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KRF0_9PHAE3.440e-2848.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFQ9_9PHAE4.300e-2846.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE4.420e-2848.61DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L6D5_9PHAE5.830e-2847.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMV6_9PHAE8.120e-2846.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1396contigP-littoralis_Contig1396:10990..11424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size437
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.66e-06
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size432
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.6338348-CDS-P-littoralis_Contig1396:10989..114211680789644.6338348-CDS-P-littoralis_Contig1396:10989..11421Pylaiella littoralis U1_48CDSP-littoralis_Contig1396 10990..11421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.644342-UTR-P-littoralis_Contig1396:11421..114241680789644.644342-UTR-P-littoralis_Contig1396:11421..11424Pylaiella littoralis U1_48UTRP-littoralis_Contig1396 11422..11424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1396.8.1prot_P-littoralis_Contig1396.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1396 10990..11421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1396.8.1

>prot_P-littoralis_Contig1396.8.1 ID=prot_P-littoralis_Contig1396.8.1|Name=mRNA_P-littoralis_Contig1396.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKT
SVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEI
EMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVEKTG
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mRNA from alignment at P-littoralis_Contig1396:10990..11424-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1396.8.1 ID=mRNA_P-littoralis_Contig1396.8.1|Name=mRNA_P-littoralis_Contig1396.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig1396:10990..11424- (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAGAAGACTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1396:10990..11424-

>mRNA_P-littoralis_Contig1396.8.1 ID=mRNA_P-littoralis_Contig1396.8.1|Name=mRNA_P-littoralis_Contig1396.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1396:10990..11424- (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATT
CATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCGTTC
TCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAGATC
GAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGGCAA
GATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGA
TGCCGCCGGACACCACGGTGGAGAAGACTGGT
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