mRNA_P-littoralis_Contig1395.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1395.5.1
Unique NamemRNA_P-littoralis_Contig1395.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.750e-27
Identity = 67/197 (34.01%), Postives = 105/197 (53.30%), Query Frame = 1
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGV-ALIS 588
            +F  Q  SL  QE C  A+ + + I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y       K  L+ +   L+ QVGE P  Y  RA   R K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +     E E  R R  +  G  AL++
Sbjct:  377 VFTSQFRSLLEQERCLGAIESKKTIRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDANVHYVRNLMPDFNVQRSVLLAHSEVKTELVEKVILTTWAETEAARKRASESVGAYALVT 573          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.310e-26
Identity = 66/197 (33.50%), Postives = 105/197 (53.30%), Query Frame = 1
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGV-ALIS 588
            +F  Q  SL  QE C  A+ +   I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E+W+  +  Y     T K  L+ +  +L+ QVGE P  Y  RA  LR   E +G   SD ++N H  R L  D+ +Q+S+LL   EI+T+ +E+ +  +  E E  R R  +  G  AL++
Sbjct:   73 VFTSQFRSLLKQERCLGAIESKNTIRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDANFHYVRNLLPDFNVQRSVLLAHSEITTKLVEKVIMTSWAETEAARKRASESVGAYALVT 269          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.880e-25
Identity = 61/178 (34.27%), Postives = 96/178 (53.93%), Query Frame = 1
Query:   58 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGV-ALIS 588
            + T  +  G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  R   LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R  +  G  AL++
Sbjct:   60 KETIRVSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSILRQKLEAYGWVQSDHDANAHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKRASESVGAYALVT 237          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.840e-23
Identity = 60/178 (33.71%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   58 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGV-ALIS 588
            + T  I  G  +   + L+V  G  AV++A +AW +I+ K+ VP++V  +   G P+E+W+  + ++     T K  L+ +W +L+ Q GE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R  +  G  AL++
Sbjct:  105 KETIRISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLFRVHAETDKLELQGQWYSLKQQSGEEPRRYLTRASVLRQKLEAYGWAQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKRASESVGAYALVT 282          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5JCR6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 8.880e-23
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   58 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 555
            + T  I  G+ +   + L V  G  AV++A +AW +I+ K+ VP++V  +   GSP+E+W+  +        + K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:  105 KETIRISAGNTDANISALKVEHGTEAVDRAFKAWQLIISKIQVPTIVPAILDSGSPTESWDQFLNFCRVHAESDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 270          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.450e-22
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   58 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELE 540
            + T     G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E
Sbjct:  360 KETIRTSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRILLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETE 520          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-20
Identity = 56/197 (28.43%), Postives = 99/197 (50.25%), Query Frame = 1
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGV-ALIS 588
            +F  Q   L+  ++C +A+ +   I+VG  +     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E+W +    +     T +  L+ EW  L   V   P  Y +R   LR +    GV +++ ++NRH+ R L  +Y +    L+    +  E +ER +  A  E+E  R ++ +  G  AL++
Sbjct:  136 VFESQFRMLWQLDDCLNAIVSEETIRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERIIVNAWAEMEARRKKKQESVGAHALVT 332          
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.010e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   58 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRH 423
            + T  I  G  +L  + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H
Sbjct:  105 KETIRISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWGQSDHDANVH 226          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1395.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5LNE2_9PHAE2.750e-2734.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE7.310e-2633.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKK7_9PHAE7.880e-2534.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH8_9PHAE1.840e-2333.71Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JCR6_9PHAE8.880e-2334.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KB85_9PHAE1.450e-2235.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN82_9PHAE2.300e-2028.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQQ7_9PHAE6.010e-1636.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1395contigP-littoralis_Contig1395:3987..4613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size627
Hectar predicted targeting categoryother localisation
Exons1
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789644.5094225-CDS-P-littoralis_Contig1395:3986..46131680789644.5094225-CDS-P-littoralis_Contig1395:3986..4613Pylaiella littoralis U1_48CDSP-littoralis_Contig1395 3987..4613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1395.5.1prot_P-littoralis_Contig1395.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1395 3987..4613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1395.5.1

>prot_P-littoralis_Contig1395.5.1 ID=prot_P-littoralis_Contig1395.5.1|Name=mRNA_P-littoralis_Contig1395.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=209bp
MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQ
RAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKEILEQE
WINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDY
ALQKSMLLISDEISTETLERTVKKAHGELELERSREGQGKGVALISAAGA
AELGTGNTS
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mRNA from alignment at P-littoralis_Contig1395:3987..4613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1395.5.1 ID=mRNA_P-littoralis_Contig1395.5.1|Name=mRNA_P-littoralis_Contig1395.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig1395:3987..4613+ (Pylaiella littoralis U1_48)
ATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGTGCGATGA CGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAAAAATTTAAGAC CAGCAGACTTGCACGTGATTTTTGGTGTACCAGCAGTAGAGAAGGCACAG AGAGCGTGGAGTATCATACTGGAGAAGGTCACTGTCCCATCTCTTGTCGA GCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGAGCTGATGGTAG AGATGTATACTGCCTTGCCCACCACAGCCAAAGAAATACTTGAGCAGGAG TGGATTAATCTGGAGATGCAAGTAGGAGAGACCCCCACTTTGTACTTTGC TCGCGCCAAAACGCTGCGCACAAAGCGTGAAAAACATGGCGTGACACTTT CCGATTCAGAGTCTAACAGACATATTGCCCGCCGTCTTTCGTCCGACTAC GCACTGCAAAAGAGTATGCTTCTGATAAGTGATGAGATTTCTACAGAGAC CCTCGAACGCACAGTGAAGAAGGCGCACGGGGAGTTGGAATTGGAACGGT CGAGGGAGGGCCAGGGCAAGGGCGTCGCCCTCATCTCTGCCGCGGGGGCG GCAGAGTTGGGGACGGGGAACACATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1395:3987..4613+

>mRNA_P-littoralis_Contig1395.5.1 ID=mRNA_P-littoralis_Contig1395.5.1|Name=mRNA_P-littoralis_Contig1395.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig1395:3987..4613+ (Pylaiella littoralis U1_48)
ATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGTGCGATGA
CGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAAAAATTTAAGAC
CAGCAGACTTGCACGTGATTTTTGGTGTACCAGCAGTAGAGAAGGCACAG
AGAGCGTGGAGTATCATACTGGAGAAGGTCACTGTCCCATCTCTTGTCGA
GCAGCTGCAGGCACTAGGTAGTCCGAGTGAAGCATGGGAGCTGATGGTAG
AGATGTATACTGCCTTGCCCACCACAGCCAAAGAAATACTTGAGCAGGAG
TGGATTAATCTGGAGATGCAAGTAGGAGAGACCCCCACTTTGTACTTTGC
TCGCGCCAAAACGCTGCGCACAAAGCGTGAAAAACATGGCGTGACACTTT
CCGATTCAGAGTCTAACAGACATATTGCCCGCCGTCTTTCGTCCGACTAC
GCACTGCAAAAGAGTATGCTTCTGATAAGTGATGAGATTTCTACAGAGAC
CCTCGAACGCACAGTGAAGAAGGCGCACGGGGAGTTGGAATTGGAACGGT
CGAGGGAGGGCCAGGGCAAGGGCGTCGCCCTCATCTCTGCCGCGGGGGCG
GCAGAGTTGGGGACGGGGAACACATCC
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