mRNA_P-littoralis_Contig1394.1.2 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 5.430e-161 Identity = 221/265 (83.40%), Postives = 236/265 (89.06%), Query Frame = 3
Query: 414 LFWKHLKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEHNV 1208
+F LSWMS+ VQK FH+FC+HFATEMYDEHIFLP++ENGELDRVMGQYEKLGFPGA+GSTDVTHI W RCPYNQ RSYTGKEGKPT+GYQVTVNHAGRVLAVTEGFTGSTNDKTIIC D AVDRIR DKQY EK F V+ KDGTT TLKGCYLIVDNGYHKWR LIEPSKYPLS DLLFSKRLESVRKDVECFFGILK+RFRILKLAMTYQ+QER+DYVFFTCCILH MLHT DGM LEE+VNWV SAELQ+T HN+
Sbjct: 140 VFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNL 404
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 417 bits (1072), Expect = 1.730e-141 Identity = 191/249 (76.71%), Postives = 214/249 (85.94%), Query Frame = 3
Query: 432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSA 1178
++SWMS+ VQ FHKFCKHFA EMYDEHI+LP+++NGELD VM QY++LGF GA+GS DVTHI W +CPYN ARSYTGKEG PT+GYQVTVNHAGR +AVTEGFT STNDKT +CWDA V++IR D QYTEKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ L+EP+KYPLS D+LFSKRLESVRKDVECFFGILK FRI K+AM Y EQERID VFFTCCILH MLHT DGMD L EN WVSSA
Sbjct: 117 QVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSA 365
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 409 bits (1050), Expect = 1.890e-137 Identity = 200/282 (70.92%), Postives = 219/282 (77.66%), Query Frame = 3
Query: 432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYT----------------------------EKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
++SWMS+ VQ FHKFC+HFA EMYDE I LPT+E+G+LD VM QY++LGF GAVGS DVTHIAW RCPYNQARSYTGKEG PTI YQVTV+HAGR +AVTEGFTGSTNDKTI+CWD AV++I DK YT EKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ LIEPSKYPLS DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTC ILH MLHT DGMD L EN NWVSSA + +T
Sbjct: 104 QMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGAT 385
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 392 bits (1008), Expect = 2.840e-133 Identity = 184/230 (80.00%), Postives = 203/230 (88.26%), Query Frame = 3
Query: 504 MYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
MYDEHI LPT+E+G+LD V+ QY++LGF GA+GS DVTHIAW RCPYNQARSYTGKEG PTIGYQVTV+HAGR +AVTEGFTGSTNDKT +CWDAAV++IR DKQYTEKTFDVYN+DGTT TLKGCY++VDNGYHKW+ LIEPSKYPLS DLLFSKRLESVRKDVECFFGILK R RIL LAM +Q QERID VFFTCCILH MLHT DGMD L EN NWVSSA + +T
Sbjct: 1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 230
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 379 bits (973), Expect = 2.090e-127 Identity = 183/255 (71.76%), Postives = 203/255 (79.61%), Query Frame = 3
Query: 429 LKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
++SWMS+ VQ FHKFC+ FA EMYDEHI LP +E+G+L VM QY++LG CPYNQARSYTGK+ PTI YQVTV+HA R +AVTEGFTGSTNDKTI+CWDAAVD+IR DKQYTEKTFD+YN+DGTT TLKGCY + DNGYHKW+ LIEPSKYPLS DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTCCILH MLHT DGMD L EN NWVSSA + +T
Sbjct: 38 FQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 275
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 354 bits (908), Expect = 2.190e-115 Identity = 169/257 (65.76%), Postives = 198/257 (77.04%), Query Frame = 3
Query: 435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEHN 1205
+S++S TFH+F ++FA EMY EHIFLPT + + +VM QY++LGF GA GSTDVTHI WG CPYNQARSYTGKEG PT+ YQVTV+H RVLAVT GFTGSTNDK+II +D AV +IR+D Y+EK F VY DGT LKGCYL+VDNGYHKW TLI PSKYP+ DL FSKRLESVRKDVECFFGI+K RFRILKL++ Y +QE ID VFFTCCILH MLH+ D ++EE NW +A L + WEHN
Sbjct: 178 MSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHN 432
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 350 bits (897), Expect = 8.990e-115 Identity = 165/252 (65.48%), Postives = 199/252 (78.97%), Query Frame = 3
Query: 435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQS 1190
+S++S V TFH+FCK+FA E+YDE+++LPT E +L +VM QY+++GFPGAVGSTDVTHI WG CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV RIR D YTE+ + +Y +DG KGCYL+VDNGYHKWRTLI PSK P+ GDL+FSKRLES RKDVEC+FGILK RFRI KLA+ + +QE ID VFFTCCILH MLH+ D D+ E NW SA L +
Sbjct: 103 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 352
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 350 bits (897), Expect = 1.570e-113 Identity = 165/252 (65.48%), Postives = 199/252 (78.97%), Query Frame = 3
Query: 435 LSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQS 1190
+S++S V TFH+FCK+FA E+YDE+++LPT E +L +VM QY+++GFPGAVGSTDVTHI WG CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV RIR D YTE+ + +Y +DG KGCYL+VDNGYHKWRTLI PSK P+ GDL+FSKRLES RKDVEC+FGILK RFRI KLA+ + +QE ID VFFTCCILH MLH+ D D+ E NW SA L +
Sbjct: 194 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHN 443
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 311 bits (796), Expect = 4.600e-100 Identity = 151/257 (58.75%), Postives = 182/257 (70.82%), Query Frame = 3
Query: 432 KLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQSTWEH 1202
+LS MS ++ Q TFHKFC+HFA EM+DEHI+LPT LD VMG + +LG+ GA GSTDVTHI W CP+ RS+TGKEG PTI Y VTV+H GR LAVT GFTG+TNDKTII +D+ V++IR QYTE+ + + +GT R +GC+LIVDNGYH+W TLI PSKYP D FS+ LESVRKDV CF RILKL M Y ++E +D +FFTCCILH MLHT DG+D EEN +W SA WEH
Sbjct: 55 QLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTY--LDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEH 301
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 295 bits (756), Expect = 7.760e-93 Identity = 155/263 (58.94%), Postives = 176/263 (66.92%), Query Frame = 3
Query: 405 QRELFWKHLKLSWMSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGAVGSTDVTHIAWGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVDRIRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHIMLHTSDGMDDLEENVNWVSSAELQST 1193
+ F ++SWMS+ VQ FHKFC+HFA +MYDEHI L +E+G+LD V+ G CPYNQARSYTGKEG PTI YQV TI+CWDAAV++IR DKQYTEKTFDVYN+DGTT TLKG YL+VDNGYHKW+ LIEPSKYPLS DLLFSKRL+SVR+D GILK RFRILKLAM YQ QERID VFFTCCI+H MLHT DGMD L EN VSSA + +T
Sbjct: 182 RNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSGWVYG-----------------CPYNQARSYTGKEGFPTIAYQVV---------------------TIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGAT 406 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1394.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1394.1.2 >prot_P-littoralis_Contig1394.1.2 ID=prot_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp MSSAVVQKTFHKFCKHFATEMYDEHIFLPTDENGELDRVMGQYEKLGFPGback to top mRNA from alignment at P-littoralis_Contig1394:15283..18685+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1394.1.2 ID=mRNA_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3403bp|location=Sequence derived from alignment at P-littoralis_Contig1394:15283..18685+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1394:15283..18685+ >mRNA_P-littoralis_Contig1394.1.2 ID=mRNA_P-littoralis_Contig1394.1.2|Name=mRNA_P-littoralis_Contig1394.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1394:15283..18685+ (Pylaiella littoralis U1_48)back to top |