mRNA_P-littoralis_Contig139.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig139.129.1
Unique NamemRNA_P-littoralis_Contig139.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig139.129.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 2.770e-97
Identity = 159/209 (76.08%), Postives = 161/209 (77.03%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTPSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSK 607
            MDMDTATVSTPARQSLGTRPAVTPT SAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSK
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSK 202
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BLAST of mRNA_P-littoralis_Contig139.129.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.310e-56
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTPSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLGTRPAVTPT SAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
[Close]
BLAST of mRNA_P-littoralis_Contig139.129.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.060e-12
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFK 598
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFK 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig139.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE2.770e-9776.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE1.310e-5694.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K994_9PHAE3.060e-1263.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig139contigP-littoralis_Contig139:501535..502495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size608
Hectar predicted targeting categoryother localisation
Exons3
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789643.9768076-UTR-P-littoralis_Contig139:501534..5015381680789643.9768076-UTR-P-littoralis_Contig139:501534..501538Pylaiella littoralis U1_48UTRP-littoralis_Contig139 501535..501538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789643.9867814-CDS-P-littoralis_Contig139:501538..5017151680789643.9867814-CDS-P-littoralis_Contig139:501538..501715Pylaiella littoralis U1_48CDSP-littoralis_Contig139 501539..501715 +
1680789643.995205-CDS-P-littoralis_Contig139:501910..5021531680789643.995205-CDS-P-littoralis_Contig139:501910..502153Pylaiella littoralis U1_48CDSP-littoralis_Contig139 501911..502153 +
1680789644.0105467-CDS-P-littoralis_Contig139:502312..5024951680789644.0105467-CDS-P-littoralis_Contig139:502312..502495Pylaiella littoralis U1_48CDSP-littoralis_Contig139 502313..502495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig139.129.1prot_P-littoralis_Contig139.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig139 501539..502495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig139.129.1

>prot_P-littoralis_Contig139.129.1 ID=prot_P-littoralis_Contig139.129.1|Name=mRNA_P-littoralis_Contig139.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
MDMDTATVSTPARQSLGTRPAVTPTPSAKKDEDERRKRRTSGPRAVGTDA
QQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
K
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mRNA from alignment at P-littoralis_Contig139:501535..502495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig139.129.1 ID=mRNA_P-littoralis_Contig139.129.1|Name=mRNA_P-littoralis_Contig139.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=961bp|location=Sequence derived from alignment at P-littoralis_Contig139:501535..502495+ (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACCGACACCATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGGCACTCTGTTTAGT
TTCATATGCGCCGTTTGAAGTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCAAGATAACGGGCATATACGAAGATGATCGTTGGCTACTGCC
TAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTCATCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACCCGTCTCTTGCAACCTT
GCTGCCCCCCCTATGTGCCGGCGTTATTTACACAGTGACTCTCGTGGTAT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig139:501535..502495+

>mRNA_P-littoralis_Contig139.129.1 ID=mRNA_P-littoralis_Contig139.129.1|Name=mRNA_P-littoralis_Contig139.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig139:501535..502495+ (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACCGACACCATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAG
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