mRNA_P-littoralis_Contig1006.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1006.11.1
Unique NamemRNA_P-littoralis_Contig1006.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.530e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  182 RSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDP 319
            RS QLRA T +F AF+QGD E+SF+ FPVA RH VH GP+FN+SDP
Sbjct:  317 RSFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDP 362
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BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  182 RSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDP 319
            RS Q       F  +++GD+  EK   +F VAF+HP HGGP+FNMSDP
Sbjct:  120 RSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDP 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE7.530e-1167.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI2.920e-550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1006contigP-littoralis_Contig1006:38317..40107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.3728502-CDS-P-littoralis_Contig1006:38318..384591680789346.3728502-CDS-P-littoralis_Contig1006:38318..38459Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 38319..38459 -
1680789346.382095-CDS-P-littoralis_Contig1006:39927..401071680789346.382095-CDS-P-littoralis_Contig1006:39927..40107Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 39928..40107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1006.11.1prot_P-littoralis_Contig1006.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1006 38319..40107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1006.11.1

>prot_P-littoralis_Contig1006.11.1 ID=prot_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
LWSKNCAAVASGNARTAGGAGPRCAKCNEFWRVTVKPKILNFLSPAHKHT
TDKDLSTGQKPLPSAASRHVQVRRILTRRCREILCGVPGRLPSSCPRRPD
FQHERPS
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mRNA from alignment at P-littoralis_Contig1006:38317..40107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1006.11.1 ID=mRNA_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-littoralis_Contig1006:38317..40107- (Pylaiella littoralis U1_48)
TTGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGC
TGGGGGAGCGGGGCCGAGGTGTGCGAAGTGCAACGAGTTCTGGCGTGTGA
CCGTCAAGCCAAAGATCCTAAACTTCCTCTCTCCTGCGCACAAGCACACC
ACGGACAAAGACCTCAGCACAGGTCAGAAGGTAAGTCAGGCTTCAACAAA
CCAGCGTGGGCATGGCATGGAGTGGTTGGTGGAGAATGAGACCGTGGGCA
ATGTGTGATACTCTTGTTGGGTAGGGGGAGGGTGAGGCCGTGGGCAATGT
TTGCCGCGCTTGTTCAGGCAGGTGGGGGGGAGGCCATGGGCAATGTTTGA
TGCGTTGTTCACCGTTCACCATTCTTCGCAATATCGCTTGCCGGTAGTTG
GACAAGCTCTCGAGGACAGCGGCAGACTTGAAGGCGGCGAACGAAGCGAA
CGAGCGGTGGAAGGAGACAGTGAAGAAGTATCGGGAGAAGTGTACTGAGC
TTCCGCAGGAGCAAGGGGACGCTGTCCACGAGTTTCTCATCCACCCGGAT
ACGAGGAAGCTGCTGGACTCGAAGCTCCCGCCAAGTAGCGAGCATAGGGC
TCTCCTGAACGTGCGTGTGTGCTGTTTATTTATTTATTTATTTTTTATAT
GTCCTCACAGTACGCTGTGTATCGTTACAAATGCGACAGGAGGGTTCTCA
ACCGTCCAGACTTTCTTATTGATGGCTGTGCTGACTTATCCAGGCTTACC
TACCGAAACTGAATCGTCTGAGCTTACCCACCGAAATTGCAACGTATGTC
GCACGGACTGCCTTGGCCTAGGATCTCACCCGTCGACGTTGAAGTTCTGC
ATCTACTACAGCGGGGTAGCGGGCACGGGCGCGTACAACGCGCTGAGGGA
AGTGCTACACCTGCCCTCCCCATCGCACATCAGGAATCTGCGGGCACGGG
CTGTACCCGGGCAGAGCGGCTTGCTCTTCGATAACATCAAGGTAAGATGC
TCGAGGCCACCTGGAGGGCCATGAACGCCTCCCAAACTGGTTGTCTTTAG
TATAGCGGTTCCAGTTCAGTGTCGGTATGGATGCAATATCACCGTTACAG
AGCAGTATCGGCCCGAACATAACTAAACACGTTGATCAGTACGGACAAAG
GGGTGCTGGATGGAGATATCGGGTTAGGTTTTAGTGTGAAGACAACAATA
CTTGATTCAAACGTTGGTTTGAAGCTGTGGTGCGTTATCGGCGTCGGCCA
GCAAGAGGCTCAGCACTGTATTCGTGTCGATAGATAAGTATCCCTGTACC
TCGTCATGAACCTCACATTGCCAGAGTGACCATCGAACGTAACCCCTCTA
CTACCTCGTTAACACGGGGTGAGTTCCCCCTCCTTCCATCCCGGCGAAAC
ATTAGACGTTCTTCATCAGTGAGGCCAACCCGGAGTACAAGTTTGCCGTG
TGGCGAATCCGTGGATGGGCAACGGTCGCAGGTGTATTCTGCACAAAATC
GGCTGAACGGTGTGCGCGGGAGTTCCACCCTCGCCCTCGGACCCCATCAC
CCTCCCTTCCCACTTACACGTCCCCCTCTCCCTCCTTCCCTGTGCGCATT
TTACCACTTCTCGGCCACTCTCCGTAATATATGCGCTACATATCATAGCC
GCTCCCATCAGCTGCGAGCCGGCACGTTCAAGTTCGGCGCATTCTCACAA
GGCGATGCCGAGAAATCCTTTGCGGAGTTCCCGGTCGCCTTCCGTCATCC
TGTCCACGGAGGCCCGATTTTCAACATGAGCGACCCTCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1006:38317..40107-

>mRNA_P-littoralis_Contig1006.11.1 ID=mRNA_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1006:38317..40107- (Pylaiella littoralis U1_48)
TTGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAACGCTCGCACTGC
TGGGGGAGCGGGGCCGAGGTGTGCGAAGTGCAACGAGTTCTGGCGTGTGA
CCGTCAAGCCAAAGATCCTAAACTTCCTCTCTCCTGCGCACAAGCACACC
ACGGACAAAGACCTCAGCACAGGTCAGAAGCCGCTCCCATCAGCTGCGAG
CCGGCACGTTCAAGTTCGGCGCATTCTCACAAGGCGATGCCGAGAAATCC
TTTGCGGAGTTCCCGGTCGCCTTCCGTCATCCTGTCCACGGAGGCCCGAT
TTTCAACATGAGCGACCCTCC
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