mRNA_P-littoralis_Contig1006.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1006.10.1
Unique NamemRNA_P-littoralis_Contig1006.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.120e-22
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:    7 AAGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLAGGRGGXXXXXXLGESNTSTGGGEMASTSCDSTRAE*SVEEGREHDGLLSRPIVRDLSLSILDGAGASTGGDS 357
            AA I +GT+NSRK DLLDYL+ +V  FR +   GAGPNVT  GL      XXXXXX GE NT TG GEMAS   D T  E   ++G +HD  LSRPI  D S S+L+GAG S+G  S
Sbjct:  441 AAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGLXXXXXXXXXXXXAGEGNTLTGSGEMASAGGDFTTEEVPTQDGMDHDDFLSRPIAMDFSRSVLEGAGVSSGSGS 557
[Close]
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.490e-6
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 AGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLA 141
            AGI++GT+NSR++DLLDYL  YVG F  +S EGAGP+ T  G A
Sbjct:  271 AGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE1.120e-2255.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE6.490e-661.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1006contigP-littoralis_Contig1006:34791..35412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size624
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.3249888-CDS-P-littoralis_Contig1006:34790..350391680789346.3249888-CDS-P-littoralis_Contig1006:34790..35039Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 34791..35039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.3355541-UTR-P-littoralis_Contig1006:35039..354121680789346.3355541-UTR-P-littoralis_Contig1006:35039..35412Pylaiella littoralis U1_48UTRP-littoralis_Contig1006 35040..35412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1006.10.1prot_P-littoralis_Contig1006.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1006 34791..35039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1006.10.1

>prot_P-littoralis_Contig1006.10.1 ID=prot_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
KNAAGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLAGGR
GGERGGENLGESNTSTGGGEMASTSCDSTRAE*
back to top

mRNA from alignment at P-littoralis_Contig1006:34791..35412+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1006.10.1 ID=mRNA_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=622bp|location=Sequence derived from alignment at P-littoralis_Contig1006:34791..35412+ (Pylaiella littoralis U1_48)
AAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGGAAGGAGGA
TCTACTCGATTACCTCGACGAGTATGTGGGCGAGTTCAGGTGTGACTCGG
GCGAAGGGGCAGGCCCCAACGTGACCGATATCGGGCTAGCAGGGGGTCGT
GGCGGGGAGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGACAGG
TGGTGGTGAGATGGCCTCTACCAGTTGTGATTCGACGAGGGCGGAATAAT
CTGTGGAGGAGGGGAGGGAACACGACGGTTTGCTATCCCGACCGATTGTA
AGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGG
TGATTCGTGAAGTAACTACCGAGGCAAGAGGTGAAGGTTGGGATGTCGGC
GGTATGTTTTTTTTGTTTTGCTTTGTCATCATGTAATTGATGTTCGCGGA
TCTGAGCTGCCAATCTCGTTTTGCCTTGCCTGTGTTATGTGCGTGTCAAA
GTTGGCGTCTGGTCTGGTGGCGGTTTACCCTCGTCTCACCACAACGACCG
CAGATGCCTTGCACACCTTAGACGCTCCAGAAGACGGTTGAAATTTTTTT
TTTTGTTCTGCGGGCTTAGACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1006:34791..35412+

>mRNA_P-littoralis_Contig1006.10.1 ID=mRNA_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1006:34791..35412+ (Pylaiella littoralis U1_48)
AAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGGAAGGAGGA
TCTACTCGATTACCTCGACGAGTATGTGGGCGAGTTCAGGTGTGACTCGG
GCGAAGGGGCAGGCCCCAACGTGACCGATATCGGGCTAGCAGGGGGTCGT
GGCGGGGAGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGACAGG
TGGTGGTGAGATGGCCTCTACCAGTTGTGATTCGACGAGGGCGGAATAA
back to top