mRNA_P-littoralis_Contig1384.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1384.8.1
Unique NamemRNA_P-littoralis_Contig1384.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A2D8LL70_9FLAO (S1/P1 Nuclease n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LL70_9FLAO)

HSP 1 Score: 232 bits (592), Expect = 5.970e-73
Identity = 119/152 (78.29%), Postives = 124/152 (81.58%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            KNERGDIYQAIQKCVAVLKNKNAP ++K   LK              +   + KG      RWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQ+G
Sbjct:   95 KNERGDIYQAIQKCVAVLKNKNAPREEKVFYLKMLVHFMGDLHQPLHIGLAEDKGGNDFQVRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQKG 246          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A2E2W9L2_9FLAO (S1/P1 Nuclease n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2W9L2_9FLAO)

HSP 1 Score: 174 bits (441), Expect = 3.510e-50
Identity = 86/152 (56.58%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GD+Y AI  CV+VLK+KNA  ++K   LK              +   + KG      RWFN+GTNLHTVWDSKM+DSY+MSYTELA N   L+KK++  IQQG+VKDWMYESRALCK IYATT+ G+KL YRYMY+Y++  R QLQ+G
Sbjct:   95 KSEKGDLYVAINSCVSVLKDKNATQEEKVFYLKMLIHFMGDLHQPLHVGLAEDKGGNDFQVRWFNKGTNLHTVWDSKMLDSYKMSYTELAKNTTQLSKKELKTIQQGTVKDWMYESRALCKTIYATTQVGDKLGYRYMYDYVDIARMQLQKG 246          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A2G2CEL9_9FLAO (S1/P1 Nuclease n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2G2CEL9_9FLAO)

HSP 1 Score: 171 bits (433), Expect = 5.410e-49
Identity = 85/151 (56.29%), Postives = 105/151 (69.54%), Query Frame = 3
Query:  285 NERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            NE+GDI Q I+KC++VLKN N+P ++K   LK              +  +  KG      RWF++GTNLHTVWDSKM+D Y MSYTELA N + LTK QV AI++GSV DWMYESRALC+ IY  TE+GEKL Y YMYEYM+ +R QLQ+G
Sbjct:   95 NEKGDIIQGIEKCISVLKNNNSPKEEKIFYLKMLVHFMGDLHQPLHIGLEDDKGGNDFQVRWFSDGTNLHTVWDSKMLDFYDMSYTELAVNTDVLTKPQVEAIKKGSVLDWMYESRALCENIYGNTESGEKLGYGYMYEYMDVLRFQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A5C6YUN3_9FLAO (S1/P1 nuclease n=1 Tax=Aequorivita antarctica TaxID=153266 RepID=A0A5C6YUN3_9FLAO)

HSP 1 Score: 167 bits (424), Expect = 1.210e-47
Identity = 84/152 (55.26%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI Q I++C+AVLK+  +  K K   LK              +   + KG      RWFN+GTNLHTVWD KM+D Y+MSYTE+ATN + L+K+QV AI++G+V DWMYESRALC++IYA TE GEKLSY YMYEYM+T+R QLQ+G
Sbjct:   94 KSEKGDIIQGIEECIAVLKDDKSSRKDKVFHLKMLVHFLGDLHQPLHIGLAEDKGGNDFQVRWFNDGTNLHTVWDYKMLDFYEMSYTEVATNTDVLSKEQVEAIKKGNVLDWMYESRALCEDIYAHTEIGEKLSYNYMYEYMDTLRSQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A330MKP3_9FLAO (Uncharacterized protein n=1 Tax=Aequorivita sp. CIP111184 TaxID=2211356 RepID=A0A330MKP3_9FLAO)

HSP 1 Score: 166 bits (420), Expect = 4.810e-47
Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+++GDI Q I KC++VLKN N+P ++K   LK              +     KG      RWF++GTNLH+VWD +M+DSY+MSYTE+A N + L+K+QV AI+ G+V DWMYESRALC++IY  TE GEKLSY+YMY+YM+T+R QLQ+G
Sbjct:   94 KSDKGDIIQGINKCISVLKNTNSPKEEKLFYLKMLVHFMGDLHQPLHIGLADDKGGNDFQVRWFSDGTNLHSVWDYRMLDSYEMSYTEIAANTDVLSKEQVKAIKSGTVIDWMYESRALCEDIYEHTEIGEKLSYKYMYDYMDTLRSQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A1A9LIK3_9FLAO (S1/P1 Nuclease n=1 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=A0A1A9LIK3_9FLAO)

HSP 1 Score: 166 bits (419), Expect = 6.800e-47
Identity = 83/152 (54.61%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI QAI KC++VLKN  +P  +K   LK              +     KG      RWF++GTNLH+VWD KMIDSY+MSYTELA N + L+K+QV AI++G+V DWMYESRALC+ IY  TE GEKL Y YMY+YM+T+R QLQ+G
Sbjct:   94 KSEKGDIIQAINKCISVLKNDKSPKDEKVFYLKMLAHFMGDLHQPLHIGLADDKGGNDFQVRWFSDGTNLHSVWDYKMIDSYEMSYTELAKNTDVLSKEQVEAIKKGTVLDWMYESRALCENIYGHTEIGEKLGYNYMYDYMDTLRSQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: I3YX19_AEQSU (S1/P1 Nuclease n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) TaxID=746697 RepID=I3YX19_AEQSU)

HSP 1 Score: 164 bits (416), Expect = 1.910e-46
Identity = 82/152 (53.95%), Postives = 104/152 (68.42%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI Q I+KC++VLKN+N+    K+  LK              +   + KG       WF +GTNLHTVWDSKMIDSY MSYTE+A N + L+K+QV AI  G+V DWMY+SRALC+ IYA TE G+KLSY YMY+YMN +R QLQ+G
Sbjct:   94 KSEKGDIIQGIEKCISVLKNENSSRDDKAFYLKMLVHFIGDLHQPLHVGLGEDKGGNDFQVLWFKDGTNLHTVWDSKMIDSYDMSYTEIAKNTDVLSKEQVEAIMSGTVLDWMYDSRALCENIYANTEIGQKLSYNYMYDYMNPLRSQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: UPI001F19C800 (S1/P1 nuclease n=1 Tax=Aequorivita sp. F47161 TaxID=2874475 RepID=UPI001F19C800)

HSP 1 Score: 164 bits (414), Expect = 3.810e-46
Identity = 82/152 (53.95%), Postives = 106/152 (69.74%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI QAI+KC++VLK+ ++P + K   LK              +   + KG      RWF +GTNLHTVWDSKMID Y MSYTELATN + L+K+QV AI++G+V DWMYESR +C++IY  TE GEKL Y YMY+YM+ VR QLQ+G
Sbjct:   94 KSEKGDIIQAIKKCISVLKDDDSPKEDKVFYLKMLVHFMGDLHQPLHIGLAEDKGGNDFQVRWFKDGTNLHTVWDSKMIDFYDMSYTELATNTDVLSKQQVEAIKKGTVIDWMYESRGICEDIYDHTEVGEKLGYNYMYKYMDVVRFQLQKG 245          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: UPI0003FE88F3 (S1/P1 nuclease n=1 Tax=Aequorivita capsosiphonis TaxID=487317 RepID=UPI0003FE88F3)

HSP 1 Score: 162 bits (411), Expect = 1.100e-45
Identity = 81/152 (53.29%), Postives = 106/152 (69.74%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI Q I +C+AVLKN N+  + K   LK              +  ++ KG       WF +GTNLH VWDS+M+DSY+MSYTE+A N++ LTK+QV AI+ G+  DWMYESRALC+EIY+ TE GEKLSY YMY+YM+T+R QLQ+G
Sbjct:   95 KSEKGDIIQGIDECIAVLKNDNSSKEDKVFHLKMLAHFLGDLHQPLHIGMEEDKGGNDFQVLWFKKGTNLHKVWDSQMLDSYEMSYTEVAANSDVLTKEQVKAIKSGTAVDWMYESRALCEEIYSNTEIGEKLSYNYMYDYMDTLRFQLQKG 246          
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Match: A0A137REF1_9FLAO (S1/P1 Nuclease n=2 Tax=Aequorivita TaxID=153265 RepID=A0A137REF1_9FLAO)

HSP 1 Score: 161 bits (407), Expect = 4.260e-45
Identity = 81/152 (53.29%), Postives = 104/152 (68.42%), Query Frame = 3
Query:  282 KNERGDIYQAIQKCVAVLKNKNAPAKKKSSILKC*FILWAICTSRCTLVWQKIKGETISIRRWFNEGTNLHTVWDSKMIDSYQMSYTELATNANPLTKKQVAAIQQGSVKDWMYESRALCKEIYATTETGEKLSYRYMYEYMNTVRGQLQRG 737
            K+E+GDI Q I+KC++VLK+ N+  + K   LK              +  +  KG      RWF++GTNLHTVWD KMID Y+MSYTELA N + LTK+QV  I++G V DWMYESRALC++IY  TE GEKL Y YMY+YM+T+R QLQ+G
Sbjct:   94 KSEKGDIIQGIEKCISVLKDANSTKEDKIFHLKMLVHFMGDLHQPLHIGLEDDKGGNDFQVRWFSDGTNLHTVWDYKMIDFYEMSYTELAANTDVLTKEQVEMIKKGGVLDWMYESRALCEDIYKNTEIGEKLGYAYMYKYMDTLRFQLQKG 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1384.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LL70_9FLAO5.970e-7378.29S1/P1 Nuclease n=2 Tax=Flavobacteriaceae bacterium... [more]
A0A2E2W9L2_9FLAO3.510e-5056.58S1/P1 Nuclease n=1 Tax=Flavobacteriaceae bacterium... [more]
A0A2G2CEL9_9FLAO5.410e-4956.29S1/P1 Nuclease n=2 Tax=Flavobacteriaceae TaxID=495... [more]
A0A5C6YUN3_9FLAO1.210e-4755.26S1/P1 nuclease n=1 Tax=Aequorivita antarctica TaxI... [more]
A0A330MKP3_9FLAO4.810e-4752.63Uncharacterized protein n=1 Tax=Aequorivita sp. CI... [more]
A0A1A9LIK3_9FLAO6.800e-4754.61S1/P1 Nuclease n=1 Tax=Aequorivita soesokkakensis ... [more]
I3YX19_AEQSU1.910e-4653.95S1/P1 Nuclease n=1 Tax=Aequorivita sublithincola (... [more]
UPI001F19C8003.810e-4653.95S1/P1 nuclease n=1 Tax=Aequorivita sp. F47161 TaxI... [more]
UPI0003FE88F31.100e-4553.29S1/P1 nuclease n=1 Tax=Aequorivita capsosiphonis T... [more]
A0A137REF1_9FLAO4.260e-4553.29S1/P1 Nuclease n=2 Tax=Aequorivita TaxID=153265 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1384contigP-littoralis_Contig1384:23170..23943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1120951.AUBG01000014_gene3227
PFAMsS1-P1_nuclease
Model size774
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.23e-35
EggNOG OGs28JIP@1|root,2Z82C@2|Bacteria,4NFN9@976|Bacteroidetes,1HZ0J@117743|Flavobacteriia
DescriptionS1 P1 nuclease
Cds size336
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.7460256-UTR-P-littoralis_Contig1384:23169..236071680789639.7460256-UTR-P-littoralis_Contig1384:23169..23607Pylaiella littoralis U1_48UTRP-littoralis_Contig1384 23170..23607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.7557952-CDS-P-littoralis_Contig1384:23607..239431680789639.7557952-CDS-P-littoralis_Contig1384:23607..23943Pylaiella littoralis U1_48CDSP-littoralis_Contig1384 23608..23943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1384.8.1prot_P-littoralis_Contig1384.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1384 23608..23943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1384.8.1

>prot_P-littoralis_Contig1384.8.1 ID=prot_P-littoralis_Contig1384.8.1|Name=mRNA_P-littoralis_Contig1384.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MTRIAITIFIVIFSLQTGIANEDWGKTGHRVTGEIAEKYLSRKSKKAIDA
LLNGHSLAFVSNYADDIKSDDAYRKYGPWHYVNFPFDSTYEASEKMNEVI
FTKQFKSVLQY*
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mRNA from alignment at P-littoralis_Contig1384:23170..23943-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1384.8.1 ID=mRNA_P-littoralis_Contig1384.8.1|Name=mRNA_P-littoralis_Contig1384.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig1384:23170..23943- (Pylaiella littoralis U1_48)
ATGACACGTATAGCAATCACTATATTTATTGTAATTTTTAGCTTACAAAC TGGTATAGCCAATGAAGATTGGGGTAAAACCGGGCATAGGGTAACAGGCG AAATAGCCGAAAAATATTTATCTAGAAAGTCGAAAAAGGCGATTGATGCG TTGCTAAATGGGCATTCGTTAGCTTTCGTTTCAAATTATGCAGACGACAT AAAAAGCGATGACGCTTATCGAAAATATGGACCGTGGCACTATGTAAATT TTCCGTTCGATAGTACCTATGAAGCTTCTGAAAAAATGAACGAGGTGATA TTTACCAAGCAATTCAAAAGTGTGTTGCAGTATTAAAAAATAAAAATGCC CCCGCGAAGAAAAAGTCTTCTATCTTAAAATGCTAGTTCATTTTATGGGC GATTTGCACCAGCCGTTGCACATTGGTTTGGCAGAAGATAAAGGGGGAAA CGATTTCCATAAGGCGCTGGTTTAATGAAGGAACTAACCTGCATACGGTA TGGGATTCAAAAATGATAGATAGCTACCAAATGTCGTACACCGAATTGGC TACGAATGCCAATCCGCTTACAAAAAAACAAGTTGCTGCGATTCAACAAG GTTCTGTAAAAGATTGGATGTACGAGAGCCGTGCTCTTTGTAAAGAAATT TATGCCACTACGGAAACGGGCGAAAAATTGAGCTACCGGTATATGTACGA ATATATGAACACGGTACGGGGGCAACTACAAAGGGGGAATTCGCTTGGCA GCTGTCCTAAACCAAATCTTTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1384:23170..23943-

>mRNA_P-littoralis_Contig1384.8.1 ID=mRNA_P-littoralis_Contig1384.8.1|Name=mRNA_P-littoralis_Contig1384.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig1384:23170..23943- (Pylaiella littoralis U1_48)
ATGACACGTATAGCAATCACTATATTTATTGTAATTTTTAGCTTACAAAC
TGGTATAGCCAATGAAGATTGGGGTAAAACCGGGCATAGGGTAACAGGCG
AAATAGCCGAAAAATATTTATCTAGAAAGTCGAAAAAGGCGATTGATGCG
TTGCTAAATGGGCATTCGTTAGCTTTCGTTTCAAATTATGCAGACGACAT
AAAAAGCGATGACGCTTATCGAAAATATGGACCGTGGCACTATGTAAATT
TTCCGTTCGATAGTACCTATGAAGCTTCTGAAAAAATGAACGAGGTGATA
TTTACCAAGCAATTCAAAAGTGTGTTGCAGTATTAA
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