mRNA_P-littoralis_Contig1380.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1380.8.1
Unique NamemRNA_P-littoralis_Contig1380.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1380.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1380contigP-littoralis_Contig1380:13916..14485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.2057168-UTR-P-littoralis_Contig1380:13915..140171680789639.2057168-UTR-P-littoralis_Contig1380:13915..14017Pylaiella littoralis U1_48UTRP-littoralis_Contig1380 13916..14017 -
1680789639.2258937-UTR-P-littoralis_Contig1380:14437..144851680789639.2258937-UTR-P-littoralis_Contig1380:14437..14485Pylaiella littoralis U1_48UTRP-littoralis_Contig1380 14438..14485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789639.2165313-CDS-P-littoralis_Contig1380:14017..144371680789639.2165313-CDS-P-littoralis_Contig1380:14017..14437Pylaiella littoralis U1_48CDSP-littoralis_Contig1380 14018..14437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1380.8.1prot_P-littoralis_Contig1380.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1380 14018..14437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1380.8.1

>prot_P-littoralis_Contig1380.8.1 ID=prot_P-littoralis_Contig1380.8.1|Name=mRNA_P-littoralis_Contig1380.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MGIFCIITYFHRCPVQCLYKSRTLQVYFCCRRGLGVSCHWLVGGFVSNGV
SHVLLCMVAFLHRYRRKRAFTSKHFIQQQYRPQHRDQIINFVHVLRSKSD
HNDHCFSQLNTHHTQWVNYVHCSFHCEASRNKKNKIQLF*
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mRNA from alignment at P-littoralis_Contig1380:13916..14485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1380.8.1 ID=mRNA_P-littoralis_Contig1380.8.1|Name=mRNA_P-littoralis_Contig1380.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig1380:13916..14485- (Pylaiella littoralis U1_48)
CATACCATACCATACCATACCGTACCATACCATACCATACCATACCATAT
GGGGATTTTTTGTATTATTACTTATTTCCATAGATGCCCGGTGCAATGCT
TGTACAAGTCCAGGACATTACAAGTATACTTTTGCTGCCGGAGAGGTCTT
GGTGTCTCGTGTCATTGGTTGGTCGGAGGGTTCGTTTCGAATGGAGTATC
GCATGTACTGCTGTGTATGGTTGCGTTTCTACACCGATACCGCCGTAAAC
GTGCTTTCACATCAAAGCATTTCATACAACAGCAGTATCGACCACAGCAC
CGAGACCAAATAATCAACTTCGTGCATGTGCTCCGGAGTAAAAGTGACCA
CAATGACCACTGCTTTAGTCAACTCAATACCCACCACACGCAATGGGTGA
ATTATGTTCATTGTTCCTTTCACTGTGAAGCATCCAGGAATAAAAAAAAC
AAAATCCAGCTGTTTTGAGCTCGATAGTTGACTGTTTTTAAAACCGCCGT
CGCCGAGTGTTTTTTCTGCCGTACTTTGTTCTCATGTTAATCCGACTGAA
ACGCAGTCGGCGGGGCGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1380:13916..14485-

>mRNA_P-littoralis_Contig1380.8.1 ID=mRNA_P-littoralis_Contig1380.8.1|Name=mRNA_P-littoralis_Contig1380.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1380:13916..14485- (Pylaiella littoralis U1_48)
ATGGGGATTTTTTGTATTATTACTTATTTCCATAGATGCCCGGTGCAATG
CTTGTACAAGTCCAGGACATTACAAGTATACTTTTGCTGCCGGAGAGGTC
TTGGTGTCTCGTGTCATTGGTTGGTCGGAGGGTTCGTTTCGAATGGAGTA
TCGCATGTACTGCTGTGTATGGTTGCGTTTCTACACCGATACCGCCGTAA
ACGTGCTTTCACATCAAAGCATTTCATACAACAGCAGTATCGACCACAGC
ACCGAGACCAAATAATCAACTTCGTGCATGTGCTCCGGAGTAAAAGTGAC
CACAATGACCACTGCTTTAGTCAACTCAATACCCACCACACGCAATGGGT
GAATTATGTTCATTGTTCCTTTCACTGTGAAGCATCCAGGAATAAAAAAA
ACAAAATCCAGCTGTTTTGA
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