mRNA_P-littoralis_Contig138.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.79.1
Unique NamemRNA_P-littoralis_Contig138.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig138.79.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.890e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 TGMGNQCKRGQCFARAMQMFPGKGMDRIPTEVVLALLRH 117
            +G GNQC+RG CFARAM MF GKGM+ IP +VVLALLR+
Sbjct:  185 SGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE3.890e-1071.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:370446..370725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size280
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789638.6592753-UTR-P-littoralis_Contig138:370445..3704511680789638.6592753-UTR-P-littoralis_Contig138:370445..370451Pylaiella littoralis U1_48UTRP-littoralis_Contig138 370446..370451 +
1680789638.6865253-UTR-P-littoralis_Contig138:370565..3707251680789638.6865253-UTR-P-littoralis_Contig138:370565..370725Pylaiella littoralis U1_48UTRP-littoralis_Contig138 370566..370725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789638.674218-CDS-P-littoralis_Contig138:370451..3705651680789638.674218-CDS-P-littoralis_Contig138:370451..370565Pylaiella littoralis U1_48CDSP-littoralis_Contig138 370452..370565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.79.1prot_P-littoralis_Contig138.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 370452..370565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.79.1

>prot_P-littoralis_Contig138.79.1 ID=prot_P-littoralis_Contig138.79.1|Name=mRNA_P-littoralis_Contig138.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
MGNQCKRGQCFARAMQMFPGKGMDRIPTEVVLALLRH*
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mRNA from alignment at P-littoralis_Contig138:370446..370725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.79.1 ID=mRNA_P-littoralis_Contig138.79.1|Name=mRNA_P-littoralis_Contig138.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=280bp|location=Sequence derived from alignment at P-littoralis_Contig138:370446..370725+ (Pylaiella littoralis U1_48)
ACGGGCATGGGTAACCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGAT
GCAGATGTTTCCTGGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTC
TAGCACTGTTGAGGCACTGATTATGGTTGCGAATTGCTGTCGGGGAAATA
GCAACTGCTGTATTTCGTAGCCCACGAGCGGACGGAGCGGCGAGATCTCG
AAAACTGTTGTAATCAGGGACAGCACCGGCATGCAGAGGGTGCTGAACAC
GTTGCGGATCAGATAAGTCGTGGTCAAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:370446..370725+

>mRNA_P-littoralis_Contig138.79.1 ID=mRNA_P-littoralis_Contig138.79.1|Name=mRNA_P-littoralis_Contig138.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig138:370446..370725+ (Pylaiella littoralis U1_48)
ATGGGTAACCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGAT
GTTTCCTGGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTCTAGCAC
TGTTGAGGCACTGA
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