mRNA_P-littoralis_Contig138.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.24.1
Unique NamemRNA_P-littoralis_Contig138.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 9.030e-25
Identity = 56/104 (53.85%), Postives = 65/104 (62.50%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTGDGVKGTVAEAAAALAAALTPEDD 439
            RG VATW K  W  I+  T+++CFK+CGLTL LDGSEDHAWC   FGD YRE+L +QR EW   H  V L PLQLP VP  +     +  AA  L A L P  D
Sbjct:  446 RGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA-ESTANHIEAAAKELEAGLLPRGD 548
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.280e-24
Identity = 56/104 (53.85%), Postives = 65/104 (62.50%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTGDGVKGTVAEAAAALAAALTPEDD 439
            RG VATW K  W  I+  T+++CFK+CGLTL LDGSEDHAWC   FGD YRE+L +QR EW   H  V L PLQLP VP  +     +  AA  L A L P  D
Sbjct:  458 RGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA-ESTANHIEAAAKELEAELLPRGD 560
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.810e-24
Identity = 59/113 (52.21%), Postives = 67/113 (59.29%), Query Frame = 2 
Query:  107 GSVQPAASRGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEW-EHAHGVELEPLQLPVVPTGDGVKGTVAEAAAALAAALTPEDDS 442
            G +QP   RG V+TW KE W  I+  T++ CFKVCGLTL LDGSED AWCT  FG+ YREVL +QR EW     GV L PLQLP V +  G            A  L PE DS
Sbjct:  485 GKLQPPG-RGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSEDDAWCTHNFGEGYREVLVQQRAEWGAQRPGVTLPPLQLPEVSSASGANPIATAEKEVTAKLLPPEGDS 596
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.220e-24
Identity = 56/104 (53.85%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTGDGVKGTVAEAAAALAAALTPEDD 439
            RG VATW K  W  I+  T ++CFK+CGLTL LDGSEDHAWC   FGD YRE+L +QR EW   H  V L PLQLP VP  +     +  AA  L A L P  D
Sbjct:  453 RGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA-ESTANHIEAAAKELEAGLLPRGD 555
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.920e-24
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTG 370
            RG V+TW K+ WE I+  T+++CFK+CGLTL LDGSEDHAWC   FG++YR++L EQ   W   H  V L PL+LP VP G
Sbjct:  117 RGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG 197
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 8.300e-24
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTGDGVKGTVAEAAAALAAALTPEDD 439
            RG VATW K  W  I+   +++CFK+CGLTL LDGSEDHAWC   FGD YRE+L +QR EW   H  V L PLQLP VP  +     +  AA  L A L P  D
Sbjct:  591 RGAVATWCKNAWASITPEIVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA-ESTANHIEAAAKELEAGLLPRGD 693
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5KRI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.210e-23
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTG 370
            RG V+TW KE WE ++  T+++CFK+CGLTL LDG+++HAWC   FG++YR++L EQ   W   H  V L PL+LP VP G
Sbjct:   35 RGVVSTWCKEAWESVTSETVKTCFKICGLTLALDGNKNHAWCKHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPRG 115
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.250e-23
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVP 364
            RG VATW K  W  I+  T+++CFK+CGLTL LDGSEDHAWC   FGD YRE+L +QR EW   H  V L PLQLP VP
Sbjct:  504 RGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP 582
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.420e-23
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTG 370
            RG V+TW KE WE I+  T+++CFK+CGLTL LDGSEDHAWC   FG++YR++L EQ   W   H  V L PL+LP VP G
Sbjct:  176 RGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG 256
[Close]
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Match: A0A6H5K0T0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.590e-23
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  131 RGEVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGDNYREVLREQRGEWEHAH-GVELEPLQLPVVPTG 370
            RG V+TW KE WE I+ +T+++CFK+CGLTL LDG EDHAWC   FG+N R++L EQ   W   H  V L PL+LP VP G
Sbjct:   73 RGVVSTWCKEAWESITPKTVKTCFKICGLTLALDGREDHAWCEHNFGENCRDLLDEQHAVWLAEHPDVTLPPLKLPKVPGG 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE45_9PHAE9.030e-2553.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEE8_9PHAE1.280e-2453.85DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE1.810e-2452.21DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE3.220e-2453.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBJ7_9PHAE7.920e-2456.79DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE8.300e-2452.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRI4_9PHAE1.210e-2353.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR1_9PHAE1.250e-2362.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8R4_9PHAE1.420e-2358.02DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0T0_9PHAE1.590e-2356.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:99618..100351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size734
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.7523015-CDS-P-littoralis_Contig138:99617..1000731680789635.7523015-CDS-P-littoralis_Contig138:99617..100073Pylaiella littoralis U1_48CDSP-littoralis_Contig138 99618..100073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.763797-UTR-P-littoralis_Contig138:100073..1003511680789635.763797-UTR-P-littoralis_Contig138:100073..100351Pylaiella littoralis U1_48UTRP-littoralis_Contig138 100074..100351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.24.1prot_P-littoralis_Contig138.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 99618..100073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.24.1

>prot_P-littoralis_Contig138.24.1 ID=prot_P-littoralis_Contig138.24.1|Name=mRNA_P-littoralis_Contig138.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
VKRKKKARRAAAGGVCLVRPRQRRRGRVRLPESTRRLRSTCGEQGGGRDV
GEGGVGRNLGEDHPLVLQGLRSHPQPRRKRGSRVVHLHVRRQLPRGSSRA
ARRVGACARRRTRTAPATGRPHRRRRQGHGGGGGGSAGSRSNARGRLGRG
G*
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mRNA from alignment at P-littoralis_Contig138:99618..100351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.24.1 ID=mRNA_P-littoralis_Contig138.24.1|Name=mRNA_P-littoralis_Contig138.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=734bp|location=Sequence derived from alignment at P-littoralis_Contig138:99618..100351+ (Pylaiella littoralis U1_48)
GTGAAGAGAAAGAAGAAAGCAAGGAGGGCAGCAGCTGGGGGAGTTTGCCT
CGTCCGTCCGCGTCAGCGAAGAAGAGGAAGGGTCCGGCTCCCAGAGAGTA
CCCGCCGGCTCCGTTCAACCTGCGGCGAGCAGGGGGGAGGTCGCGACGTG
GGTGAAGGAGGTGTGGGAAGGAATCTCGGAGAGGACCATCCGCTCGTGCT
TCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGATCACGCG
TGGTGCACCTCCACGTTCGGCGACAACTACCGCGAGGTTCTTCGCGAGCA
GCGCGGCGAGTGGGAGCATGCGCACGGCGTCGAACTCGAACCGCTCCAGC
TACCGGTCGTCCCCACCGGAGACGGCGTCAAGGGCACGGTGGCGGAGGCG
GCGGCAGCGCTGGCAGCCGCTCTAACGCCCGAGGACGACTCGGGCGAGGA
GGATGATGAGGATGACATTGAAGACCTCGTTGACTTGGCGGAGGAGGAAT
CAGAGGGTTCATAGGATGAGCTGTAGTTTGGGTTGAATGCAGGTTACCTA
GGTGGGGGCATGCCGAGGGTGTGGCAGAGGGAGTGGTTGTTTTGGTCGGA
TCGCAGGAGAGGTGTTGCTGTAGCTCATGCATACTTTTATAGAGTTTATT
CGTAGTTTGTTTGTCTGCAGGAAAGTACGATATTTTGTGGTTCGGGTACA
CCTTGTGTTTTTGAGATCAAGAAATGAAACGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:99618..100351+

>mRNA_P-littoralis_Contig138.24.1 ID=mRNA_P-littoralis_Contig138.24.1|Name=mRNA_P-littoralis_Contig138.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig138:99618..100351+ (Pylaiella littoralis U1_48)
GTGAAGAGAAAGAAGAAAGCAAGGAGGGCAGCAGCTGGGGGAGTTTGCCT
CGTCCGTCCGCGTCAGCGAAGAAGAGGAAGGGTCCGGCTCCCAGAGAGTA
CCCGCCGGCTCCGTTCAACCTGCGGCGAGCAGGGGGGAGGTCGCGACGTG
GGTGAAGGAGGTGTGGGAAGGAATCTCGGAGAGGACCATCCGCTCGTGCT
TCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGATCACGCG
TGGTGCACCTCCACGTTCGGCGACAACTACCGCGAGGTTCTTCGCGAGCA
GCGCGGCGAGTGGGAGCATGCGCACGGCGTCGAACTCGAACCGCTCCAGC
TACCGGTCGTCCCCACCGGAGACGGCGTCAAGGGCACGGTGGCGGAGGCG
GCGGCAGCGCTGGCAGCCGCTCTAACGCCCGAGGACGACTCGGGCGAGGA
GGATGA
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