mRNA_P-littoralis_Contig1005.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1005.14.1
Unique NamemRNA_P-littoralis_Contig1005.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-17
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:  133 RTREFAPAACRVVGSLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCF 450
            R RE   AA   VG+ YC     P P+ D ++  ER+ AA+QH G CG   A  IA ++   V   A+    E T K  RN+ACYDA  ALN RG GVQ+RR +CF
Sbjct:   52 RFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGA--EITTKRMRNKACYDAGTALNARGRGVQLRRQKCF 155
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BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.120e-13
Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:  112 VLEHHTARTREFAPAACRVVGSLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCF 450
            V E H  R REF   A    G+  C      + +     R++   AA++HPG CGV +AG    V  +DV   A RR    TF    NQ C+DAA+ L V G GVQ+ R  CF
Sbjct:    4 VRESHPGRVREFVFDAVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVYLAG----VSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECF 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE1.990e-1745.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE4.120e-1338.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1005contigP-littoralis_Contig1005:39438..41009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size455
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.975488-CDS-P-littoralis_Contig1005:39438..395131680789345.975488-CDS-P-littoralis_Contig1005:39438..39513Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 39439..39513 -
1680789345.9840715-CDS-P-littoralis_Contig1005:40631..410091680789345.9840715-CDS-P-littoralis_Contig1005:40631..41009Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 40632..41009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1005.14.1prot_P-littoralis_Contig1005.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1005 39439..41009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1005.14.1

>prot_P-littoralis_Contig1005.14.1 ID=prot_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
KQQRHQRVWRTKTTHTMFTRRSSKPTVAPSMPSFSSCVLEHHTARTREFA
PAACRVVGSLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIA
AVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCF
E
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mRNA from alignment at P-littoralis_Contig1005:39438..41009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1005.14.1 ID=mRNA_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1572bp|location=Sequence derived from alignment at P-littoralis_Contig1005:39438..41009- (Pylaiella littoralis U1_48)
AAGCAGCAACGCCACCAGCGAGTATGGCGAACCAAGACTACCCACACCAT
GTTCACACGGCGGAGCTCGAAGCCGACGGTAGCACCGTCCATGCCCAGCT
TCTCGTCGTGCGTGTTGGAGCACCACACTGCCCGGACGCGAGAATTTGCC
CCAGCAGCATGCCGTGTCGTTGGCAGCCTATATTGCGAGTGTGTTGGTGA
GCCTCAGCCTATGAAAGACTTCACCCAGCGTGAAGAGCGCAGGGTGGCGG
CGAGGCAACATCCTGGAACTTGTGGCGTCGCGATGGCGGGACTTATCGCT
GCTGTCGAAACGGAGGACGTCCGGCAAACGGCCTCTCGGAGGCAGCAGGA
GGCTACATTCAAATCCTTCAGGAATCAGGTCAGCACTCGCGGGATGAGAG
AACATGTATGTGAGGGTTGCTGTAGTTCGGCGGCTGCTGCGTGCGTCTGA
TTGTCGTTTGCGTGTGTTAATCGTCGGGTGTTGTCGCACATAGTGGCCAT
GCCGTGTTGTCGACTGAAGTGCGTTTGCTTCGTCGCTTCGTGCTTGAGAA
TTTCCTGCAGCAGTTAGTTCTTGTATCATACATTTCGAACCACACTACAG
CAGTAGTTCTAAATGTTTCTGCATCTGCCTCCACCTACCCTTATAATAAC
ATCATATCATATCATACATGTGGATAACTATGTACCAGGTATACTTTTAC
TTGTCTGATACTTCGTTCGTACCGGTATCTTACAACAACAGTCCCAAACT
TTCATGATAGTAGTATCGCATCACGTGATACACACCACCAGGTACAGCAG
TAGTGTTCACGCGCCATGATTTTACTTCGAAAGCGCGAAGTTCCGGGTGC
ATACAAGTTCGCCTACTGATGGATTGGTGCATACAAGTTCGCGTCGTTCG
TGTACATATTGAGTTGCATGCACACCCCTTTCCAGGTCCCAATAATTCAC
AGTATGTACGTATCATATTTCTGCACTTGGTATTTTACACCTTCTGCACT
TGGTATTTTACACCGTGAGCATACCGGTATCGCACGTGTGCATGGCGAGT
ACATTGTGTGCAGTTTTGAACTGTTTCAAGTTCAAATGTTGTATGGATAG
TAAAATCATATCATAGGCGGTGATATTTTCATTTCTGGCGACAATTTCCG
ACAGATTCCGTATATCCCATATACCGGATGTTACAGTACATACCACACTC
CCTAGGCCGATGTTTACAGCTCGATTGCTGCGTAACAAAGAGAACGCCAA
AACCAACTTACCAAGTACATGTTTTCGAGGAGGACCTTACAACATCTTTA
TGATATCACTACTATCGGCAGTGGCACTCGTCTTGATCCTTTCAAATCAG
ACCAGGTTTGTTTTGTTCGCTGGCCTTAGTACATCACATACTTCGTATAT
GAAGACGACACCAAGTGTTGCTGTGCGCTTGTACAGTTTTTGCCTCATTT
GCGGGTTTTGATCGCTTCCAAAACCGTGTGCCGAACCCCGTGGCAGGCGT
GTTATGACGCGGCGCGCGCCCTGAATGTGCGGGGAGCGGGGGTTCAAGTC
CGTCGCAACAGATGCTTCGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1005:39438..41009-

>mRNA_P-littoralis_Contig1005.14.1 ID=mRNA_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig1005:39438..41009- (Pylaiella littoralis U1_48)
AAGCAGCAACGCCACCAGCGAGTATGGCGAACCAAGACTACCCACACCAT
GTTCACACGGCGGAGCTCGAAGCCGACGGTAGCACCGTCCATGCCCAGCT
TCTCGTCGTGCGTGTTGGAGCACCACACTGCCCGGACGCGAGAATTTGCC
CCAGCAGCATGCCGTGTCGTTGGCAGCCTATATTGCGAGTGTGTTGGTGA
GCCTCAGCCTATGAAAGACTTCACCCAGCGTGAAGAGCGCAGGGTGGCGG
CGAGGCAACATCCTGGAACTTGTGGCGTCGCGATGGCGGGACTTATCGCT
GCTGTCGAAACGGAGGACGTCCGGCAAACGGCCTCTCGGAGGCAGCAGGA
GGCTACATTCAAATCCTTCAGGAATCAGGCGTGTTATGACGCGGCGCGCG
CCCTGAATGTGCGGGGAGCGGGGGTTCAAGTCCGTCGCAACAGATGCTTC
GAG
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