mRNA_P-littoralis_Contig138.85.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig138.85.2
Unique NamemRNA_P-littoralis_Contig138.85.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig138.85.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig138contigP-littoralis_Contig138:380860..385371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3288
Hectar predicted targeting categoryother localisation
Exons3
Cds size1776
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.6195676-UTR-P-littoralis_Contig138:380859..3821731680789635.6195676-UTR-P-littoralis_Contig138:380859..382173Pylaiella littoralis U1_48UTRP-littoralis_Contig138 380860..382173 -
1680789635.663433-UTR-P-littoralis_Contig138:385173..3853711680789635.663433-UTR-P-littoralis_Contig138:385173..385371Pylaiella littoralis U1_48UTRP-littoralis_Contig138 385174..385371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789635.6356-CDS-P-littoralis_Contig138:382173..3822261680789635.6356-CDS-P-littoralis_Contig138:382173..382226Pylaiella littoralis U1_48CDSP-littoralis_Contig138 382174..382226 -
1680789635.644934-CDS-P-littoralis_Contig138:382880..3845451680789635.644934-CDS-P-littoralis_Contig138:382880..384545Pylaiella littoralis U1_48CDSP-littoralis_Contig138 382881..384545 -
1680789635.6540477-CDS-P-littoralis_Contig138:385115..3851731680789635.6540477-CDS-P-littoralis_Contig138:385115..385173Pylaiella littoralis U1_48CDSP-littoralis_Contig138 385116..385173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig138.85.2prot_P-littoralis_Contig138.85.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig138 382174..385173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig138.85.2

>prot_P-littoralis_Contig138.85.2 ID=prot_P-littoralis_Contig138.85.2|Name=mRNA_P-littoralis_Contig138.85.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=592bp
MPSKCTHRGCSKRSGYGVAGTKTAEFCCEHAKDGMVDVVSKKCTHRGCTK
RPSYCVAGTKTAEFCCEHAKDGMVDVRSKKCTHRGCTKRPSYGVAGTKMT
QCCCEHAKDGIVDVRSQKCTHRDCTIWPSYGMAGTNTAEFCCEHAKDGMV
DVFRKKCTHRGCSIWPSYGVAGTKTAEFCCSHAKGGMVNVVSKKCTHRGC
TKRPSYGVAGTKMAQCCCEHAKDGMVNVVSKKCTHRGCTTLPSYGVAGTK
TAEFCCEHAKDGMVDVAHKKCTHRGCTKRPSYGVAGTKTAEFCSQHAKDG
MVDVRSKKCSHRGCTIWPSYGVAGTNTAEFCSEHAMDGMVDVISKKCTHR
GCTKRPSYGVTGTKTAEFCCEHAKNGMVDVISKKCTHRGCSIWPNYDVAD
GTRTFCARHAEEGMVHLSTSKVFPGVRGRSGGARGGGGAGLDGGIVRVAG
ARGKRKVRSSSSTPTETCTGRSRADSKRIRQAPFHTAVSSAPIKIAVDDC
HTPIEDGSMSEPDDAEVKMEVEVSSKTDQRRALPVEALTGERTTPVEDGS
CAEAESAVKTEVGIALPSRSTAARGELNGREGKSRTRGTRS*
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mRNA from alignment at P-littoralis_Contig138:380860..385371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig138.85.2 ID=mRNA_P-littoralis_Contig138.85.2|Name=mRNA_P-littoralis_Contig138.85.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4512bp|location=Sequence derived from alignment at P-littoralis_Contig138:380860..385371- (Pylaiella littoralis U1_48)
GGAGGGGACACACAGGCAACGCAGCGTCACAAGCGACAAGGAGGAAGGAT
CAAAGGCATGACCCCCCCTCCTCGCGAAACTCTGGTAAAGATCGAACCTA
TTAGGAAGGAGAAAAGGCGATACCACCCGCACCTCGCGGAACTCTTACTC
TAGACTATACTACTGATCAAGCCCATTCTTTTTCTCGCACCGGGCAGGAT
GCCGAGTAAGTGCACCCACCGTGGCTGCTCCAAGCGGTCGGGCTATGGCG
TGGCAGGTACCAAGACGGCGGAGTTCTGCTCTAAACACGCCAAGGACGGG
ATGGTGGACGTTTTCCGTAAGAAGTGCACCCACCGTGGCTGCTCCAAGCA
GCCGAGCTATGGCGTGGCAGGTACCAAGACAGCGGAGTTCTGCTCTGGAC
ACGCCAAGGACGGGATGGTGGACGTTATTAGCAAGAAGTGCACCCACCTT
GGCTGCACCAAGCGGCCGAGATATGGTGTGGCAGGTACCAAGACGGCCGA
GTTCTGCTCTGAACACGCCAAGGACGGGATGGTGGACGTCCGTAGCAAGA
AGTGCACCCACCATGGCTGCACCAAGCAGCCGAGCTATGGTGTGGCAGGT
ACCAAGACGGCCGAGTTCTGCTCTGAACACCCCAAGGACGGGATGGTGAA
GGTCCTTGGCAAGAAGTGCACCCACCGTGGCTGCTCCAAGCGGCCGAGCC
ATGGCGTGGCAGGTACCAAGACGGCGGAGAGCTGCTGTGAACACGCCAAG
GACGCGATGGTGGACGTTGCCCACAAGAAGTGCACCCACCGTGGCTGCTT
CAAGCAGCCGAGCTATGGTGTGGCAGGTACGAAGACGGCGGAGTTCTGCT
GTGAACACGCCAAGGATGGGATGGTGGACGTCGTTAGCAAGAAGTGCACC
CACCGTGGCTGCACCAAGCGGCCGAGCTATTGTGTGGCAGGTACCAAGAC
AGCGGAGTTCTGCTGTGAACACGCCAAGGACGGGATGGTGGACGTCCGTA
GCAAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTG
GCAGGTACCAAGATGACGCAGTGCTGCTGTGAACACGCCAAGGACGGGAT
AGTGGACGTCCGTAGCCAGAAGTGCACCCACCGTGACTGCACCATTTGGC
CGAGCTATGGCATGGCAGGTACCAATACGGCGGAGTTCTGCTGTGAACAC
GCCAAGGACGGGATGGTGGACGTTTTCCGTAAGAAGTGCACCCACCGTGG
CTGCTCCATTTGGCCGAGCTATGGTGTGGCAGGTACCAAGACAGCGGAGT
TCTGCTGTAGCCACGCCAAGGGCGGAATGGTCAACGTCGTAAGCAAGAAA
TGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGCAC
CAAGATGGCGCAGTGCTGCTGCGAACACGCCAAGGACGGAATGGTGAACG
TCGTAAGCAAGAAATGCACCCACCGTGGCTGCACCACGCTGCCGAGCTAT
GGTGTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGAACACGCCAAGGA
CGGGATGGTGGACGTTGCCCACAAGAAATGCACCCACCGTGGCTGCACCA
AGCGGCCGAGCTATGGCGTGGCAGGTACCAAGACAGCGGAGTTCTGCTCT
CAACACGCCAAGGACGGAATGGTGGACGTCCGTAGCAAGAAGTGCTCCCA
CCGTGGCTGCACCATTTGGCCGAGCTATGGCGTGGCAGGCACCAATACGG
CGGAGTTCTGCTCTGAACACGCCATGGACGGGATGGTGGACGTTATTAGC
AAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGAC
AGGCACCAAGACGGCGGAGTTCTGCTGTGAACACGCCAAGAACGGGATGG
TGGACGTTATTAGCAAGAAGTGCACCCACCGTGGCTGCTCCATTTGGCCG
AACTATGACGTGGCCGACGGCACCCGAACGTTCTGCGCGAGACATGCTGA
AGAAGGAATGGTGCATCTCTCTACTTCCAAGGTATTTCCTGGTGTTCGCG
GTAGGAGTGGCGGCGCTCGAGGGGGTGGCGGTGCAGGGCTGGATGGGGGC
ATTGTCCGCGTTGCTGGTGCCCGTGGAAAAAGGAAAGTTCGCTCTTCTTC
ATCAACCCCGACGGAGACATGCACAGGCAGGAGCAGGGCAGACAGCAAGC
GAATCCGCCAGGCGCCTTTCCACACCGCTGTTTCTTCGGCCCCAATCAAG
ATTGCTGTAGATGATTGCCATACCCCAATCGAAGACGGCTCAATGTCAGA
GCCAGACGATGCTGAGGTGAAGATGGAAGTCGAAGTCTCTTCCAAGACTG
ATCAGAGGAGAGCTTTGCCAGTTGAAGCATTGACAGGAGAACGGACAACC
CCCGTGGAAGATGGTTCGTGTGCTGAGGCAGAATCTGCGGTGAAGACAGA
AGTGGGGATCGCATTGCCATCGAGAAGCACGGCCGCTCGGGGTGAGTTGT
GAAAGAGTCGTTTCTGCTCTGCAGCGGCCGAGTCCCACGTGTCATCCCTG
CTTCACCAGTATCCTCTCGTCGCCAGTGTTTTTGTTTTCATGTTGGACGT
AATGGACACGGTGTAGTTGGTTGTTTCTCTCTGGTTGTTCTTCGTAGTGT
ACGAAAAGCTTCACCAGCTTTGTGACCACAGCGCATGCGTTGTACTGCTG
TAGTGCGTGAAGCTTGTAGGAGACCGGCATGCGTGTGTTTTGTTGTCTGG
GATACCCTGGGATCTCCTTTCGGAGCTCGTACTATTCGATCGGGGTCATG
CGGGTTGTTTGTTCGTTTTCTCGCTGCTTTGTCACAGAGTCTTCTCCGGG
TTGCCAATTCTGCATGCGAGGTGATTAATGATTTCCCGTGAGATATCTCT
CAAGCACCCGTCTGTGGCTTGTTTGTACTATCTGGTGGCCTGTGGCTTGA
AAAATCTCTGGCGGTGTGGGCGGGTGGGCACAGTACATGCTGCAAGTTTC
TAGCGCAAATGGCCGCATCTACAATGGTGGCAAGATCGAAAGCATTGCAT
CACCGACGATGCTACAGCCGTACGTGACGGCCACGGCCCTTGCATTCAGC
TTTTGCCCATGCGTCTTGACCTTTGAAATGCGTTGCTTGAAACAGGTGAG
CTGAATGGCAGGGAGGGAAAGAGCCGGACGAGAGGGACGCGGAGCTAGCA
TGGTTTTCACCCCTGGGAATGATGGGACACCGCTACTGCTGTAGGCGATG
TTTGTCAGTCGGCCCTTCTGCCCGGTTGTGATGCCACCAACATTCCACGC
CACAGCAGTAGCACCATCTACCGATTCAGGAAGGTGTCAACCTCCGGCGT
GAAAATGTTGCGCCACCAAACACAAAAACCGAACTACTGCGACTGTTTGA
GCTTACACGAAGGGGGGGGGGTAAACTTCCGGTGTTCTGTGTTTCGGATG
TAGAATATCATTTCGTCATTTGATGCACGCACGTGTAATCGGTTCGGAGT
GCGGTTCATTTGCAACTGTTCATTTGTGGTTTGGAGAAGACAAGCCCACG
TATAGAATGAAGGTGCTCAATGGTGTTTTTTATCCTGCGGTCGACGGAAC
CATAGGGAAAGAGGCAGGCCGAGTAGTAAGGCATGCACCTGGTTGACTCG
TATAGAGTGGGGAACAGCGATTTTGACGACGATAGTCTGATTCCTTTCTG
TGAGCCCCTCTCTGGGTTTCACCCGTTGTCCTTGGGTGCCTTGTGGCGGG
GATTCTGCAGGTATTGGGCAGGGGTGAGACAAAAATCTCCCTGACGCTTC
ATTCTTATTTCATTGGGTTTGTTTATGTATTTTTTATGTTTTCTCTCGTT
GGTCGGTCTCCGAAACCTTTGTGATGGGCTCGATCTATGTTTCGTCTGTA
TTGCATCTGCTCCAGCATAGTTTATTTGTATCTGTGTTGCTTATTTCGAC
ATCGTATTGTCGTGTCGGTCTTTTTTCTTTTGGATTATCATGTTTCTGTG
AGGTATTGCCGAGTGGGTTTGCCTCATCGCCGGTTGGATCAGTACGGAAA
ATGGAGACATTTGATGGACGTCAGATGAGTACTTCGTGTACGGATTAGTT
GAAGCCAACCACACGACATCTACGGGAAGGAAGAATACCTTGATAGGATG
ATGGTCTCGTTGCATTTTGCTGCAAGTGAATCGTTTGATATCTCCGGTTC
TCATTCTCGTAGGATAGTGAAACGACAGCAGGGTTTGAAGTGGGAAATGG
GGGTTATTGAACCTTTGCGAATATCCAACTGACTGGCTCGCCGGAATGAA
ATGCTTTCAGTTTGGAAGGTATGTGGGTGATTTTTTGTGGCTGCTTTCCG
TCAACACTCTCTGTGGCCGAGGCTCTCTATTGAGTGCGCTTTTGTCTGGA
GGCCGAGAAACCATTTCGTTTTAGTGGATTGCACTCCTTTTTGGCCGAGA
CATCAAATTTGGTGACGAGAGTGAAAGGTGGGCGCAAGGACTCCAGGGGG
AACGAGCTTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig138:380860..385371-

>mRNA_P-littoralis_Contig138.85.2 ID=mRNA_P-littoralis_Contig138.85.2|Name=mRNA_P-littoralis_Contig138.85.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1776bp|location=Sequence derived from alignment at P-littoralis_Contig138:380860..385371- (Pylaiella littoralis U1_48)
ATGCCGAGTAAGTGCACCCACCGTGGCTGCTCCAAGCGGTCGGGCTATGG
CGTGGCAGGTACGAAGACGGCGGAGTTCTGCTGTGAACACGCCAAGGATG
GGATGGTGGACGTCGTTAGCAAGAAGTGCACCCACCGTGGCTGCACCAAG
CGGCCGAGCTATTGTGTGGCAGGTACCAAGACAGCGGAGTTCTGCTGTGA
ACACGCCAAGGACGGGATGGTGGACGTCCGTAGCAAGAAGTGCACCCACC
GTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGTACCAAGATGACG
CAGTGCTGCTGTGAACACGCCAAGGACGGGATAGTGGACGTCCGTAGCCA
GAAGTGCACCCACCGTGACTGCACCATTTGGCCGAGCTATGGCATGGCAG
GTACCAATACGGCGGAGTTCTGCTGTGAACACGCCAAGGACGGGATGGTG
GACGTTTTCCGTAAGAAGTGCACCCACCGTGGCTGCTCCATTTGGCCGAG
CTATGGTGTGGCAGGTACCAAGACAGCGGAGTTCTGCTGTAGCCACGCCA
AGGGCGGAATGGTCAACGTCGTAAGCAAGAAATGCACCCACCGTGGCTGC
ACCAAGCGGCCGAGCTATGGCGTGGCAGGCACCAAGATGGCGCAGTGCTG
CTGCGAACACGCCAAGGACGGAATGGTGAACGTCGTAAGCAAGAAATGCA
CCCACCGTGGCTGCACCACGCTGCCGAGCTATGGTGTGGCAGGTACCAAG
ACGGCGGAGTTCTGCTGTGAACACGCCAAGGACGGGATGGTGGACGTTGC
CCACAAGAAATGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCG
TGGCAGGTACCAAGACAGCGGAGTTCTGCTCTCAACACGCCAAGGACGGA
ATGGTGGACGTCCGTAGCAAGAAGTGCTCCCACCGTGGCTGCACCATTTG
GCCGAGCTATGGCGTGGCAGGCACCAATACGGCGGAGTTCTGCTCTGAAC
ACGCCATGGACGGGATGGTGGACGTTATTAGCAAGAAGTGCACCCACCGT
GGCTGCACCAAGCGGCCGAGCTATGGCGTGACAGGCACCAAGACGGCGGA
GTTCTGCTGTGAACACGCCAAGAACGGGATGGTGGACGTTATTAGCAAGA
AGTGCACCCACCGTGGCTGCTCCATTTGGCCGAACTATGACGTGGCCGAC
GGCACCCGAACGTTCTGCGCGAGACATGCTGAAGAAGGAATGGTGCATCT
CTCTACTTCCAAGGTATTTCCTGGTGTTCGCGGTAGGAGTGGCGGCGCTC
GAGGGGGTGGCGGTGCAGGGCTGGATGGGGGCATTGTCCGCGTTGCTGGT
GCCCGTGGAAAAAGGAAAGTTCGCTCTTCTTCATCAACCCCGACGGAGAC
ATGCACAGGCAGGAGCAGGGCAGACAGCAAGCGAATCCGCCAGGCGCCTT
TCCACACCGCTGTTTCTTCGGCCCCAATCAAGATTGCTGTAGATGATTGC
CATACCCCAATCGAAGACGGCTCAATGTCAGAGCCAGACGATGCTGAGGT
GAAGATGGAAGTCGAAGTCTCTTCCAAGACTGATCAGAGGAGAGCTTTGC
CAGTTGAAGCATTGACAGGAGAACGGACAACCCCCGTGGAAGATGGTTCG
TGTGCTGAGGCAGAATCTGCGGTGAAGACAGAAGTGGGGATCGCATTGCC
ATCGAGAAGCACGGCCGCTCGGGGTGAGCTGAATGGCAGGGAGGGAAAGA
GCCGGACGAGAGGGACGCGGAGCTAG
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