mRNA_P-littoralis_Contig1005.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1005.10.1
Unique NamemRNA_P-littoralis_Contig1005.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.050e-59
Identity = 155/457 (33.92%), Postives = 223/457 (48.80%), Query Frame = 2
Query:  341 TFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF----FFACPLQLPSLARVVRCGYTEGHSPGSQPGRAVLDHHQADPEAEGGHGFREVRVFDLHAVEGLQA-----CP--------ASLHHPRQQGR--------------------LRPNPVQ*-IRPGKKEGDTVAAAVS-TRLQHLH--GGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYK 1582
            T F+ MFP   + L V +TN Y   CTT       D R+     K  T G  + P+       +Y ++GI +T+GL +   +  HW  S + D+ LVR+ M+RD+F L+Y RF H +   +P R    D + +  +D+ WHIR  E +LN  W+      QW+ +DEQMV  V   A +++R+ PKKPI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG Y+AMDN+F     F C L    +  V  C      + G+ P    LD     P   G   F   R  ++  V+ L +     C         A++  P+++                       RP+P    +R   + G ++       R  ++   GGVD ADQ NG +   HK+Y   WRRV E K  Q  +N ++++K
Sbjct:  638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFEC-LASHDIFAVGTC--RSNRTGGAVPYLQSLDRR---PVERGEMHF--ARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFK 1086          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 3.960e-51
Identity = 179/600 (29.83%), Postives = 253/600 (42.17%), Query Frame = 2
Query:  170 DRGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDP--SKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKR--------------------HP----------------------DGSYDEGW-----------DALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF----FFACPLQ-----------------LPSLARVVRCGYTEGHSPGSQPGRAV----LDH---------HQADPEAEGGHGFREVRVF-DLHAVEGLQAC----PASLHHP-----RQQGRLRPNPVQ*IRPGKKEGDTVAAAVSTRLQHLHGGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGGYAEGTPERL 1672
            DRG         HKK T     S   S S    ++ PS D     L       L  L  T F+ MFP   V L V +TN Y   CTT P     D R+     K  T G  + P+       +Y ++GI +T+GL     +  HW  S + D+ LVR+ M+RD+F L+YSRF H +   +P R                    +P                      DG+    W           D+ WHIR  E +LN  W+      +W+ +DEQM+  V   A +++R  PK+PI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG ++AM N F     F C                    +P L  + R     G    ++ G       LD          H A P A  G   +E     D H       C    P S  HP     R+ G+   + ++  +P  ++ D VA           GGV+ AD+ NG +   H++Y   WR V E K  Q  +N ++++K +++ +  Q N+   ++E GG      E+L
Sbjct:  475 DRGIPDFAGTDDHKKRTQRETVSAA-SLSASAREKLPSLDTFMDNLDESGKFPLHGLMMTCFDMMFPDEAVDLFVDKTNKYVNLCTTPPLPGAKDTRKAHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKS-LELQQPWMRK-DYVANM---------GGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANK---RIEGGGVELEVVEKL 1059          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.070e-50
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 2
Query:  173 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 763
            RG G  + D   K+E +G   SF+PSK TLD+   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T        +E RH+ ++   G++SWP  GIT +MM  VI I+LT+GLV+LP + +HW    +HD+KLVR  + RDMFLLIY RFFHMA + +P+R   G+ + GWD+L HIR
Sbjct:  441 RGDGHQYYDCHRKREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.180e-49
Identity = 119/346 (34.39%), Postives = 169/346 (48.84%), Query Frame = 2
Query:  644 TRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFFFACPLQLPSLARVVRCGYTEGHSPG--------SQPGRAVLDHHQADPEAEGGHGFREVRVFDLHAVEGLQACPASLHHPRQQGRLRPNPVQ*I-RPGKKEGDTVAAAVS-TRLQHLH--GGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGG 1645
            T ++F+L Y RFF++APA       D  YD       HIR  E + N+ WS     G W+S+DEQMV    R    ++RY   KPIKNG+K WA+ C SGYCF    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDNFF  A  L+  +   +   G   G+  G        ++ G A  +  Q              R  +L  V+ + +    L   +        P+    R     G+ V++     R +++   GGVD+ADQ  G +   H+   +FWRRVF+QK  QA SN WLL+  W   ++ Q    +    + G
Sbjct:    6 TTNLFVLFYGRFFNLAPATGKLNKDDPQYD----CKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQ----------MLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVLVTQCTAALEAATQDG 337          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.340e-48
Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 2
Query:  173 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 763
            RG G  + D   K+E +G   SF+PSK T+ +   P+FDP KLGRF   +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T    E   +E RH+ K+   G++SWP  GIT  MM  VIGI+L +GLV+LP + +HW    +HD+KLVR  + RDM LLIY RFFHMA + +PKR  DG+ + GW +L HIR
Sbjct:  647 RGDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 4.270e-46
Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123
            +IGI +T+GL +   +  HW  S + ++ LV++ M RD+F L+Y RF H +   +P+R  PDG  +  +D+ WHIR  E +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    + Y   S  DGG  GDPKLR + DCPLGRT R VL VL G C  L +++  SG ++AMDN+F
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDNYF 228          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.200e-44
Identity = 85/204 (41.67%), Postives = 112/204 (54.90%), Query Frame = 2
Query:  512 GITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123
            G     +Y+V G              +H  V  + ++ +VR  M RD+F+L Y RFFH+APA       D  YD       HIR  E +LN+ WS     G W+S+DEQMV    R    ++RY   KPIK+G+K WA+ C SGY F    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMDNFF
Sbjct:   28 GFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYD----CKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFF 227          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 6.310e-39
Identity = 80/196 (40.82%), Postives = 115/196 (58.67%), Query Frame = 2
Query:  539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123
            +IGI +T+GL +   +  HW  S + ++ LV++ M+RD+F L+Y RF H +   +P+R  PDG  +  +D+  HIR  E +LN  W+     G W+S+DEQM+  V +              + G+KL A    +GYC  S  DGG  GDPKLR + DCPLGRT R VL VL G C  L +++  SG ++AMDN+F
Sbjct:   33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYF 215          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.730e-32
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  761 RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFFFACPLQLPSLARVVRCGYTEGHSPG 1201
            R  E +LNE WS     G W+S+DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD KLR  A CPLGR+ R VL+VL  ACP  +++++ SG  VAMDNFF  A  ++  +   +   G   G+  G
Sbjct:    3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTG 149          
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.460e-30
Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 2
Query:  539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRA---FETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123
            +IGI +T+GL +   +  +W  S + ++ LV++ M+  + L  + R    +      R  + S       L+H+RA    E +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    +GYC  S  DGG  GDPKLR + DCPLGR  R VL VL G C  L +++  SG ++AMDN+F
Sbjct:   33 MIGIFITIGLTKKVRMQKNWSRSAHDNYPLVQKCMSVLLQLGWWGRDRRGSKGTGAPRKVEDS-PPSTAPLFHVRAVWELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYF 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE1.050e-5933.92HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE3.960e-5129.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3T1_9PHAE1.070e-5051.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE1.180e-4934.39DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE1.340e-4850.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMJ3_9PHAE4.270e-4642.86DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KPD8_9PHAE2.200e-4441.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE6.310e-3940.82DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE1.730e-3245.58DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE1.460e-3037.37DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1005contigP-littoralis_Contig1005:33234..38409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15707198
PFAMsDDE_Tnp_1_7
Model size3169
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons5
Evalue8.12e-15
EggNOG OGs2CXJS@1|root,2RY1K@2759|Eukaryota,39VGM@33154|Opisthokonta,3BJCI@33208|Metazoa
DescriptionpiggyBac transposable element-derived protein
Cds size1026
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1005.10.1prot_P-littoralis_Contig1005.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1005 33589..36621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.878909-UTR-P-littoralis_Contig1005:33233..335881680789345.878909-UTR-P-littoralis_Contig1005:33233..33588Pylaiella littoralis U1_48UTRP-littoralis_Contig1005 33234..33588 +
1680789345.9418933-UTR-P-littoralis_Contig1005:36621..384091680789345.9418933-UTR-P-littoralis_Contig1005:36621..38409Pylaiella littoralis U1_48UTRP-littoralis_Contig1005 36622..38409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789345.8931592-CDS-P-littoralis_Contig1005:33588..336271680789345.8931592-CDS-P-littoralis_Contig1005:33588..33627Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 33589..33627 +
1680789345.901692-CDS-P-littoralis_Contig1005:33843..342111680789345.901692-CDS-P-littoralis_Contig1005:33843..34211Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 33844..34211 +
1680789345.9118629-CDS-P-littoralis_Contig1005:34798..349441680789345.9118629-CDS-P-littoralis_Contig1005:34798..34944Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 34799..34944 +
1680789345.9240994-CDS-P-littoralis_Contig1005:35444..359141680789345.9240994-CDS-P-littoralis_Contig1005:35444..35914Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 35445..35914 +
1680789345.9323606-CDS-P-littoralis_Contig1005:36618..366211680789345.9323606-CDS-P-littoralis_Contig1005:36618..36621Pylaiella littoralis U1_48CDSP-littoralis_Contig1005 36619..36621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1005.10.1

>prot_P-littoralis_Contig1005.10.1 ID=prot_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp
MFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWP
DGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDM
FLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGAC
LVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFA
SYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYV
AMDNFFFFACPLQLPSLARVVRCGYTEGHSPGSQPGRAVLDHHQADPEAE
GGHGFREVRVFDLHAVEGLQACPASLHHPRQQGRLRPNPVQ*
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mRNA from alignment at P-littoralis_Contig1005:33234..38409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1005.10.1 ID=mRNA_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5176bp|location=Sequence derived from alignment at P-littoralis_Contig1005:33234..38409+ (Pylaiella littoralis U1_48)
ACCGGTGCGCTTTACGAGAGTTAGAAGGGGAAAGGGGCGGCGCAGGAGCC GAGGGGGAGGACGATAGCGACTGGAAAGAGGTTTTCGATTATTTAGCTGA TGCTCAACAGAAAATTCGGAAAGAAGGTGGCGGACTTGGAGGCGAAGGGT CTGGGGGTGTGGCAGGAGGGATCGCGGCACCGGGAAGACGTTTGCGGACT TTTTGCACAAGAAGGAAACTGACGGGTGCCCGAAGTCGTTTCGGCCGTCG AAGTCGACCCTCGATTCGGATGAGTATCCAAGTTTCGACCCGTCGAAACT GGGGCGTTTCAAGAGTGCGCAACTGGGACAGCTGGCATTCACCTTTTTCA ACTTCATGTTCCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGGTGATA CATTGTACCCATTATGTCGAGCAGCAGCTTCAAAAGCGGAATGAACGCGC TTATGGGGAAATTTCGAGGATCTTTCTTTTAGGGGAACGCGGAACACGAC ATTACCCCCCTCCCCGCCCCCACTTATTTTTTCCATGAAATAGTGCAACG TCCAAGGCTCACCGCAAAACGTTTGCGTTATTTATTCCCGTCCCCCGTCT CACAATACAGACGAACGACTACTTCACCTTCTGCACCACAACACCAACTC GCAATGAGGATGACAAGCGTGAAGATCGACACAAGGCGAAGGAACCCACG AATGGGCGCGCGTCGTGGCCCGACGGTGGCATCACCGCGAACATGATGTA CACCGTCATCGGCATCGTCTTGACGCTGGGACTTGTGAGGCTTCCGGAAA TCGCAAATCACTGGGACGTGAGCGACTACCACGACTTCAAGTTGGTTCGA CAGAGCATGACGCGAGACATGTTTCTCCTCATCTACAGCCGTTTTTTCCA CATGGCGCCCGCCCCCTCACCGAAGAGGCATCCAGATGGCTCCTACGACG AAGGGTGGGATGCCTTGTGGCATATTCGGTAAGAAGCTCAGCAGCACGCG TGCAGCGGCACGTTCGAGATGGCCGTGATTAGGTGGTGCTAGCGGTTGTG GATGACACAGGCCGTGCAGCCTGTAGGCAATCGCAATTCTTTGTTTTGTC ATTGTTTCCGGTGACGCTGATAAAAAGAAAATGGGGGGGTCACAGTTGTC GGAGGTTATTCGTCGTCTAATGATCGTTTATTTCGCCACACCTCCCGCTG TAGTGTCCATCCCAAGTTATGCAATAGCGTATTTCAGACGGAATGACGCA GTATTCCCCCCGTTGACACCGAAATCAAAGCGTATCAACGACTTCACAAC AGCGGGTGTCACTTACTTGTTCCGCCTCTTTTCCGTTGTAATTCATGGTC CGTACGGGGAGCACGAGGTAATGGCCGATGGGGGTTCAGCACTGGTGTCC ACAAATGAAATTCGTGAGGGGCATTGGCAAAAAGTGTTTATCCCGCTTGG TCCAACACACGTTTGATTATTCTCGGCAATATGTGTTTGCTTCGTACATA TCAGCTGCAATATCCGTGTTAACCCCTTTTGGCGACCGCACCCCGCCGGG CTACGTATGTCGCAGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCG GGGCGTGTCTTGTGGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTG TGCGTGGGCCGGACCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCC CATCAAGAACGGTGGGTGATTATCTTTCGGGTCGTGTTTCAGGTTTCATT TGTTTTTTGTGGGAATTCTGACTATGTTTGTGGTACGAACCGCTACTTTT CCACCCTTTTGCGTGCGAACGAGACGAAAGTGCCACGGAATGTCGAATCT TCGGCTAGCATGCCTGACGAGAGCGACGTTTGAAGATGTATGCAAGCGTG CACCGTACTGCGAAGTTCATGTCGCGGTACAAGTAAAAACAAAACATGAT GGACCGTGGGTAGTTCATTTTGGATGGTGTCTTTCTTGTGATGTGTTTGG GGTTCCTGTGATGTTGATTGAATTCGGGATAAGACTCGTAAATTTTCCTC TGTCGTCGCGTGCGAGCGCCGCAAGAGTGTTGCAGACTGTGGGACGTGCG GCTGGCATGCGTCGCAAGGGTGACATATGATCCGGAATCTATATGTGTTC GTAACGAGAGGCAATGCCCACCATGTGACGCGCTCGCTTGCATGCCCGCG CTTTTTCTCAGGGCTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACT GCTTTGCGAGCTACACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGG AAGTGGGCAGATTGCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGT ATTGTTCGGGGCTTGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTA CCTACGTGGCCATGGACAACTTTTTTTTCTTCGCCTGTCCTCTTCAACTG CCTTCTTTGGCACGGGTTGTTCGCTGTGGGTACACTGAAGGACATTCACC GGGGAGCCAGCCAGGCCGTGCGGTATTGGACCACCACCAAGCAGACCCCG AGGCAGAAGGGGGACATGGCTTTCGCGAGGTTCGGGTTTTTGACCTTCAC GCAGTGGAAGGACTCCAAGCTTGTCCGGCTTCTCTCCACCATCCACGTCA ACAAGGGAGACTTCGTCCCAATCCCGTACAGGTGAAGCTTGCGTCTAGTC GTTGACTAAACAGTAGTCCAACAAACACTCTTCAACCTTAGTGGTATTTC GCGTACGCCCTGTGCGCATTGCGTGTCGTCGGTTCGCGCCCGTCCCCGTT TGGACTTCGGGTTAGAAATCGTCATTGCCCGTCTTAGTAAAACAGCAGCA GTGTTCATTTTTCCGCCGTCATTGCATACTGTAATCCACACTGTTCACCT CCAGTACGCCCCCTCCCCTTATTTTCGGCCAAAACACATGAACACATGGC ACCCGGAGCAGTAAGTCAAAACGGCAGATGCGCGAGCATGGAGGGAATCA GAAATAACTGCCGACATTATCCCTTTGTACGATAGAAAGAGGGCGTGCTG TCAGTCACATTTAGCGATAGCTATCTACAGGGCCGCGTATATAATGTGTG TGTTGTGCGTGCACTTGGCCTTCGGGCTTTTCTCCCGGGGTAAGGTTGAA GAACTGTCTTCGTATCCCCGCGCTCGGAATATTTGACCCCCAGGAGTGCT GTTCAAAATAAAACATCACCAAGGAGGAAAACAGGCGTGGTTGCTGCGCG CAACTCACGTTCTTTTATTGCCTTTTTGGACCCCCACCTCAGGCGTTTCC TGCCAAAACTGGTTTTTGACGCTCGTGAAAACATCGCCCTGTCCCCTCAC CTCCCACACTTTCCGTTCTTACTTTGTTCTTCCAGTAAATTCGCCCCGGG AAAAAAGAAGGAGACACTGTGGCAGCCGCTGTGTCGACTCGCTTACAACA CCTTCATGGGGGGGTTGACCTCGCCGACCAACTAAACGGCTACTACCTTA CCCTCCACAAGGCATACAACTATTTTTGGAGGCGCGTGTTCGAACAGAAG CTCATGCAGGCGTGCTCCAACGCGTGGTTGCTGTACAAGTGGTGGCTCGC TGACATGCTTGTCCAGGTCAACGAGGAGATTACCAAGGTGGAGAAAGGCG GCTACGCAGAGGGCACGCCCGAGCGGTTGCAGCTCAAGCGTTGGAGAATG AGCAGGCGGACTTGAGGAAACTCCAGAACAAGAAGCGGGCGCAGTGGTTG CGAGCTTTGGCCATGCACCTCATCGCTCAGTCAACGCTGGGCCGCCAGGG GAGGGGGGGGCGGCACCCGCGTAAGTCATCAACGCCGCAGTTCAAGAAGC ATTATGATCGCCGCGAGCATCTTCACCAGATCGTTCAACGGCGGGACTGC GCTTCTCCGCACTGCGAGGGTACCCCTGGCGAAAGGGCCCGCGCGCCGAA ACGCGACCGCAACGCCAAAGTTTCACAAGCATGCTTTTGCCCGTCGTGCT CGCACGTGGGTGGCGTCGTCATCTGCACGGCCTGCCATGCTGACGACCGA AAGCACGAGGAGGCGTACCTAAAAACCGCCATGCGAGCGCGCACACCAAA AGGCTACCAAGAGAAGCGTGTTGGAGAAGAAATAGGCACGGCGCCCTCAT CTGGAGTTCGTCCTAGAGAGGGGATGATCGAGGGGGGGAGGGGCTGGCAT CCAACATCATGGGAAGGGGGATCTCCGGGGTGGGTGCGGCAGGGAAACAG TTCGTACAGAAAATAACATGGCGTAATTGCAAGGGCCTGGAGCTGCAAGG AGAGAGGTGGTCTCCGGGGTCTGATGCGACTTTTTGCGGAGTGTAAGCTG TACGTGTGCCGAGTCTGTTATTAACCACTTCGTGTTGTTTTTCCGGGTTT GCCTTCGGGAAATTGAAAAGACAGATGTCATGGCGGAAGTCGTTGTGTGT GGATATCCCAAGAAATTGTTTCCTACCTGCGTTGCGAGACGGGTCGTGCG GTGTGGGCTGTTGCGTTGGGGTCTTTGTATAATATTTTTGTGTTTTTTCA TTTTTCAAAACCGGGGTCCCTGCACATGAAACGTTTGACGACGATTATGT CCGTGGCGTTTTTTCATGTTCCACATCAATCGAAGTCAACACAAGTACCG TCAAACCCTCTGCCCCCCGCCATTTCGGCCGAAAAGCATGAAAACTTGGT TTTGCTCCCTGGGGGAATTAGTTTGGTACTTAAAAATGCACGTTCTCCCC CCTGAGCATGATTTTCCTCCAGGGTATTACTTTTCCGATGGGTACCCCCT GGTGATTTTTTCTCCAACACGTTTTCTTGCGCTTTTAGCATCACTGCTAT GAAAGTGGAAAGCGCCTGCTCTCAGAGCCGAACAAGCCGAAGGAGGTCGG CAGTCGTACGAGGGCATTTACTTTGATGGGGTTGCATGCATTGCTCATCA TCCGCCGTCCACGTTGGGGGTGTTAGTTCCCTTGGTTTGGTGGTGTGTTG TTGTTTCTAACCGCTGCCTTTGTGTGGACTGCTGTAGTGCGTGCAGTAGT TTTTTTGGCTTCACCCCCCGGGGTTATGCACAGTTCCAGAATAGTACTCG GAGTTGGAAGTATGGCTTTCTGGCCGGGGAGATTTCCCCCTGCGGTAATA TTTGAAAAAAAAGCTGACCCCCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1005:33234..38409+

>mRNA_P-littoralis_Contig1005.10.1 ID=mRNA_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig1005:33234..38409+ (Pylaiella littoralis U1_48)
ATGTTCCCCATGGCGGTCGTCGCTCTACTTGTCAAGGAGACGAACGACTA
CTTCACCTTCTGCACCACAACACCAACTCGCAATGAGGATGACAAGCGTG
AAGATCGACACAAGGCGAAGGAACCCACGAATGGGCGCGCGTCGTGGCCC
GACGGTGGCATCACCGCGAACATGATGTACACCGTCATCGGCATCGTCTT
GACGCTGGGACTTGTGAGGCTTCCGGAAATCGCAAATCACTGGGACGTGA
GCGACTACCACGACTTCAAGTTGGTTCGACAGAGCATGACGCGAGACATG
TTTCTCCTCATCTACAGCCGTTTTTTCCACATGGCGCCCGCCCCCTCACC
GAAGAGGCATCCAGATGGCTCCTACGACGAAGGGTGGGATGCCTTGTGGC
ATATTCGCGCGTTTGAAACGATGCTGAACGAGACGTGGAGCGGGGCGTGT
CTTGTGGGGCAGTGGATATCTTTCGACGAGCAGATGGTGTTGTGCGTGGG
CCGGACCGCGAAGTTCATGCTGCGGTATATGCCAAAAAAGCCCATCAAGA
ACGGGCTGAAACTGTGGGCAGTGGCATGTTTCTCTGGCTACTGCTTTGCG
AGCTACACCGACGGCGGTTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGC
AGATTGCCCGCTCGGCCGGACTTGCCGGATGGTCTTGTTCGTATTGTTCG
GGGCTTGCCCCAACCTCGCGGAGCAGCTCCTGCAATCTGGTACCTACGTG
GCCATGGACAACTTTTTTTTCTTCGCCTGTCCTCTTCAACTGCCTTCTTT
GGCACGGGTTGTTCGCTGTGGGTACACTGAAGGACATTCACCGGGGAGCC
AGCCAGGCCGTGCGGTATTGGACCACCACCAAGCAGACCCCGAGGCAGAA
GGGGGACATGGCTTTCGCGAGGTTCGGGTTTTTGACCTTCACGCAGTGGA
AGGACTCCAAGCTTGTCCGGCTTCTCTCCACCATCCACGTCAACAAGGGA
GACTTCGTCCCAATCCCGTACAGTAA
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