mRNA_P-littoralis_Contig1358.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1358.2.1
Unique NamemRNA_P-littoralis_Contig1358.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1358.2.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-9
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   85 DLIQGNLAKGDGRGYRFHPSTLKFCIYY 168
            DLIQGNL+KGDGRGYRFH ST+KFCIYY
Sbjct:  260 DLIQGNLSKGDGRGYRFHLSTMKFCIYY 287
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BLAST of mRNA_P-littoralis_Contig1358.2.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-9
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   85 DLIQGNLAKGDGRGYRFHPSTLKFCIYY 168
            DLIQGNLAKG+GRGYRFH STL+FCIYY
Sbjct:  235 DLIQGNLAKGNGRGYRFHESTLRFCIYY 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1358.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.520e-989.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE2.080e-989.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1358contigP-littoralis_Contig1358:8752..9148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789625.7048926-CDS-P-littoralis_Contig1358:8751..88351680789625.7048926-CDS-P-littoralis_Contig1358:8751..8835Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 8752..8835 +
1680789625.7169397-CDS-P-littoralis_Contig1358:9064..91481680789625.7169397-CDS-P-littoralis_Contig1358:9064..9148Pylaiella littoralis U1_48CDSP-littoralis_Contig1358 9065..9148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1358.2.1prot_P-littoralis_Contig1358.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1358 8752..9148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1358.2.1

>prot_P-littoralis_Contig1358.2.1 ID=prot_P-littoralis_Contig1358.2.1|Name=mRNA_P-littoralis_Contig1358.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
CRRSKGTLSTSFSSTRIRGSCWTRSSRRDLIQGNLAKGDGRGYRFHPSTL
KFCIYY
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mRNA from alignment at P-littoralis_Contig1358:8752..9148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1358.2.1 ID=mRNA_P-littoralis_Contig1358.2.1|Name=mRNA_P-littoralis_Contig1358.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=397bp|location=Sequence derived from alignment at P-littoralis_Contig1358:8752..9148+ (Pylaiella littoralis U1_48)
TGCCGCAGGAGCAAGGGGACGCTGTCCACGAGTTTCTCATCCACCCGGAT
ACGAGGAAGCTGCTGGACTCGAAGCTCCCGCCGGGTAGCGAGCATAGGGC
TCTCCTGAACGTGCGTGTGTGCTGTTTATTTATTTTTTATATGTCCTCAC
AGTACGCTATGTATCGTTATAAATGCGACAGGAGGGTTCTCAACCGTCCA
GACTTTCTTATTGATGGCTGTGCTGACTTATACATGCTTACGTACCGAAA
CTGAATCGTCTGAGCTTACCCACCGTAATTGCAACGTATTTCGCACGGAC
TGCCTTGGCCTAGGATCTCATCCAAGGCAACCTCGCGAAGGGTGACGGGA
GAGGGTATCGGTTTCACCCGTCGACGTTGAAGTTCTGCATCTACTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1358:8752..9148+

>mRNA_P-littoralis_Contig1358.2.1 ID=mRNA_P-littoralis_Contig1358.2.1|Name=mRNA_P-littoralis_Contig1358.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1358:8752..9148+ (Pylaiella littoralis U1_48)
TGCCGCAGGAGCAAGGGGACGCTGTCCACGAGTTTCTCATCCACCCGGAT
ACGAGGAAGCTGCTGGACTCGAAGCTCCCGCCGGGATCTCATCCAAGGCA
ACCTCGCGAAGGGTGACGGGAGAGGGTATCGGTTTCACCCGTCGACGTTG
AAGTTCTGCATCTACTAC
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