mRNA_P-littoralis_Contig1345.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1345.1.1
Unique NamemRNA_P-littoralis_Contig1345.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1345.1.1 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.920e-18
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:    8 WDGKTDVSKDINTGCTGKIKAGELVVKDWVDP-LHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCAAVPAALKDF*GRLHK-RGVDSSRHPD 298
            +D +   + D+++GCTG I  G+LVVKDW +P LHL+C+KREWRK +   +++K+  +DL +T ++EAAQP A VPA L  F  R    +G   S  P+
Sbjct:   57 YDPEQPAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDSTEKQEAAQPSAEVPANLVFFLQRCSSYQGKTLSNSPE 155
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BLAST of mRNA_P-littoralis_Contig1345.1.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.560e-16
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:    5 CWDGKTDVSKDINTGCTGKIKAGELVVKDWVDP-LHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCA 223
            C +  +DV +DI  GCTG+I+ G+ VVKDW+DP LHL C+KR WR  +D  +  K++ +D+GTT +KE+AQP A
Sbjct:  148 CSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220
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BLAST of mRNA_P-littoralis_Contig1345.1.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.150e-12
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:   17 KTDVSKDINTGCTGKIKAGELVVKDWVDPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKE 205
            + +++ D+ TGCTG I  G+LV+KDW  PLH  C++R W++++   ++ KK  +++GTT E+E
Sbjct:   51 ENNIADDLQTGCTGIISEGDLVIKDWDPPLHFYCARRLWKESVTQTLKAKKIIKEIGTTEEEE 113
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BLAST of mRNA_P-littoralis_Contig1345.1.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:    5 CWDGKTDVSKDINTGCTGKIKAGELVVKDWVDP-LHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCA 223
            C D +T+V +DI  G TG ++ G  VVK W DP L L C+KR WR  +D  +  K++ +D+GTT EKE+AQP A
Sbjct:   55 CSDPETNV-EDITDGYTGYMEEGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSA 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1C6_ECTSI3.920e-1844.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE5.560e-1651.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU8_ECTSI5.150e-1241.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6X3_9PHAE1.240e-1148.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1345contigP-littoralis_Contig1345:24626..25913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.276732-UTR-P-littoralis_Contig1345:24625..247531680789619.276732-UTR-P-littoralis_Contig1345:24625..24753Pylaiella littoralis U1_48UTRP-littoralis_Contig1345 24626..24753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.2860444-CDS-P-littoralis_Contig1345:24753..247961680789619.2860444-CDS-P-littoralis_Contig1345:24753..24796Pylaiella littoralis U1_48CDSP-littoralis_Contig1345 24754..24796 -
1680789619.3028758-CDS-P-littoralis_Contig1345:25659..259131680789619.3028758-CDS-P-littoralis_Contig1345:25659..25913Pylaiella littoralis U1_48CDSP-littoralis_Contig1345 25660..25913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1345.1.1prot_P-littoralis_Contig1345.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1345 24754..25913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1345.1.1

>prot_P-littoralis_Contig1345.1.1 ID=prot_P-littoralis_Contig1345.1.1|Name=mRNA_P-littoralis_Contig1345.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
PVLGRKDRRLQGHQHWVHRQDQGRGARGQGLGGPPAPRLLQARVEEGYRP
PRSAEEGLPGPRHHTREGSGPALRCRPGGSQGLLRATPQARSRLLATP*
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mRNA from alignment at P-littoralis_Contig1345:24626..25913-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1345.1.1 ID=mRNA_P-littoralis_Contig1345.1.1|Name=mRNA_P-littoralis_Contig1345.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1288bp|location=Sequence derived from alignment at P-littoralis_Contig1345:24626..25913- (Pylaiella littoralis U1_48)
CCTGTGCTGGGACGGAAAGACCGACGTCTCCAAGGACATCAACACTGGGT
GCACCGGCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGAC
CCCCTGCACCTCGTCTGCTCCAAGCGCGAGTGGAGGAAGGCTATCGACCA
CCACGTTCAGCAGAAGAAGGACTTCCAGGACCTCGGCACCACACCCGAGA
AGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGCTCTCAAGGACTTC
TGAGGTACGATCTGTATCTGATTATACCGGGCTAACGCTCCCCTCAAACA
TACAACGAAACCTCAAAATAACTTAATGGAACTTGATCTATCGAGCAGCG
ATTCGGAAACTGACGTCATAGTGCCAAATGACGCTGCAGCTCAGCGTAGA
AGCAGGCGCGCAGCTTTAATAGCAGATCGACGATCCAGAGGTGAAATTCG
AAACATACAACATCAAATCCGCAACAATGCATGTCATCGCAGAAGCAGGC
GCGCTGCCATTATCGCCGCACGTCGCGCATCCGGTCAAATTCGCATTCAC
GCCGCCAACGATACATCACCACCATCTCTCCCTCCTTCCCCTAATCCTCC
GCCGCCTACGTTACCTCCTCCACCACCACAACCTGTATGGACTGTTCAGC
ATGAGATTGGTGACGGAGCTTGCGGCTTTCGAGCAATTGCTAGACGTTTC
CTCGGTGATCCTGAGTTGCACTTACAAGCACGACATCAAATTGTACTGTA
CCTTGCACACAACAGTCAGGACGACAACCTACACATCCACGACGGCATTA
ACACAGAACTTCTTTACTGTTCAGGTTCACCGCCCTCTACATACTCCTCT
TACGACGACTAACTCTCAAGAATGTCCATGCCTACCACGTACATGGGCCA
ACCCGAAATTACTGCTGCCATCGCAGTCTATGGAACCCCTATAATTCCAC
ACTTCCAAAGTTCAACCTTACCGCACCCAGCCATCGCTGATCTCAATGAA
CTTCACTTAAGGTTCACATCTGCCTCACGTCATTACGACACCTTCACCCT
ATCAAACCCTGCCGCTCAATCCTAACATGACCCGTTACGATTCAACGGTC
CACTATTTCCTGTTCAGGGCGACTCCACAAGCGCGGAGTCGACTCCTCGC
GACACCCTGATGACGGTCTCACGGTGTGCTGAAAGGGTCGGGCAACTTCG
GGGCTGTGTCGTTCTGTACCTGGAACTACCTGCTTGCCCATAGATACAAC
CACCAGGCGTGCCGCACGACGTCTACGTGGACTATATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1345:24626..25913-

>mRNA_P-littoralis_Contig1345.1.1 ID=mRNA_P-littoralis_Contig1345.1.1|Name=mRNA_P-littoralis_Contig1345.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1345:24626..25913- (Pylaiella littoralis U1_48)
CCTGTGCTGGGACGGAAAGACCGACGTCTCCAAGGACATCAACACTGGGT
GCACCGGCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGAC
CCCCTGCACCTCGTCTGCTCCAAGCGCGAGTGGAGGAAGGCTATCGACCA
CCACGTTCAGCAGAAGAAGGACTTCCAGGACCTCGGCACCACACCCGAGA
AGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGCTCTCAAGGACTTC
TGAGGGCGACTCCACAAGCGCGGAGTCGACTCCTCGCGACACCCTGA
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