mRNA_P-littoralis_Contig1337.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1337.6.1
Unique NamemRNA_P-littoralis_Contig1337.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0CL68_9ZZZZ (NFACT-R_1 domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CL68_9ZZZZ)

HSP 1 Score: 110 bits (274), Expect = 7.130e-29
Identity = 48/96 (50.00%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKYVI 306
            + IG NA+ENWD+I + + +HIW+HLNSFPS HV+I+ +NP    + +AA LCK N+KYK +KN+K+ YT+ +NLK G ++GS+   SKRK   ++
Sbjct:   40 ILIGQNAKENWDII-NFDCDHIWLHLNSFPSCHVIIKDNNPDEDVLVYAASLCKNNTKYKNLKNLKICYTKCNNLKKGPDVGSIIYKSKRKVNTIV 134          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0KD90_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KD90_9ZZZZ)

HSP 1 Score: 96.7 bits (239), Expect = 7.010e-24
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   28 GANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCK 297
            G +A ENW LI  +E   +W+HL+SFPSPHVV+ S++PS   +  AAE C++ SKY+++ ++KV YT + NL  GD  GSV   S+RK K
Sbjct:   15 GESATENWALIDAAEGSWVWLHLDSFPSPHVVVESASPSAQVVAVAAEFCRSGSKYRRLGDLKVCYTTVSNLVKGDAPGSVEYRSRRKVK 104          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A5E8CL93_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CL93_9ZZZZ)

HSP 1 Score: 94.7 bits (234), Expect = 3.700e-23
Identity = 39/91 (42.86%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRK 291
            + +G NA++NW+++  S+  +IW+HL+ F SP+V+I +++ +  ++ +AA+LCK +SKYK +KNI V+YT + N+K G EIGS  +  K K
Sbjct:   12 IWVGQNAQDNWNILNQSQQNYIWMHLDKFSSPYVIITTNDVNSKDLLYAAQLCKEHSKYKFLKNINVIYTEVKNIKKGKEIGSAIVKGKTK 102          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: X0V946_9ZZZZ (NFACT-R_1 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0V946_9ZZZZ)

HSP 1 Score: 90.1 bits (222), Expect = 1.760e-21
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVN 273
            + +G NA++NWD+I D E  +IW+HL+ FPS HV+I    P+   I FA ELCK+ +K K +K+IKV YT+  NL  G +IGSV+
Sbjct:   11 ILLGENAQDNWDII-DFESNYIWLHLDKFPSCHVIICDETPNDDTIMFAGELCKSKTKQKTLKDIKVCYTKCSNLNKGADIGSVS 94          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0EBF0_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EBF0_9ZZZZ)

HSP 1 Score: 89.4 bits (220), Expect = 5.960e-21
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIE-----FAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCK 297
            +  G NA+ENWD+I+DSE   IW HL   PSPHVV+++    +  I+     + A +CK NSK+ K+  +K++YT I N+  G+E+GSV+    +K K
Sbjct:   15 IFCGQNAQENWDIISDSEQNDIWFHLEDNPSPHVVLKTQGKKMCNIDKKIIYYCACVCKENSKFAKMNTVKMIYTEIKNVTKGEEVGSVHTKKVKKMK 112          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0E1A8_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E1A8_9ZZZZ)

HSP 1 Score: 84.3 bits (207), Expect = 5.130e-19
Identity = 37/98 (37.76%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISE---IEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKYV 303
            + +GA+A+ENW+++++S+P H++ HL+SFPS  V++  +  +I     ++  A +CK+N+KY+ +KNIKV YT  +N+     +G V+  S RK K +
Sbjct:   11 IKVGASAKENWNILSESKPYHLFFHLSSFPSCFVILECNEDTIINNDMLQECANICKSNTKYRNMKNIKVDYTYCENVTKEKNVGEVSYKSNRKVKQI 108          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A0N9QJ39_CEV01 (DUF814 domain containing protein n=1 Tax=Chrysochromulina ericina virus TaxID=455364 RepID=A0A0N9QJ39_CEV01)

HSP 1 Score: 83.6 bits (205), Expect = 1.240e-18
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   25 IGANARENWDLITDSEP---EHIWVHLNSFPSPHVVIRSSNPSISEIE---------FAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRK 291
            IG NA EN+DL+ +S+    E+IW HLNSF SP+V++ S+  +I  I          F A LCK NSKYK +K++K++YT +  LK  D IG V I  K+K
Sbjct:   13 IGQNAEENFDLLDNSKMINNEYIWFHLNSFASPYVIMYSTLQNIKNISENNIDDFLIFGANLCKENSKYKYLKDLKIIYTLLKRLKKTDSIGEVLISGKKK 113          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0JSR5_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JSR5_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 3.940e-18
Identity = 38/98 (38.78%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   16 LVAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEF-AAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKYVI 306
            L  +G N +ENW L+ +S    I  HL+SFPS +V++++++    E+ F  AELC++N+KYK +KNIKV Y+   N+  GD +G +   S +K   ++
Sbjct:   10 LCLVGQNKKENWSLLDNSRESDILFHLSSFPSCYVILKATDIPPKEVIFKCAELCRSNTKYKNLKNIKVDYSFCSNITKGDNVGELEYKSNKKVSTIL 107          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0BRR2_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BRR2_9ZZZZ)

HSP 1 Score: 80.1 bits (196), Expect = 2.130e-17
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   19 VAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSISEIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKYV 303
            + +G NA+ENW+L+ D+   ++W HL SFPS  V+I    P    +  AA +CK ++KY+ +KN+K+ YT + NLK   + G+V  +S R+   +
Sbjct:   11 IIVGQNAKENWNLL-DTNENYLWFHLRSFPSCFVIIEDEYPDNLTVLEAATICKEHTKYRNLKNLKINYTPVKNLKKVGKEGTVQFISNRQVSTI 104          
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Match: A0A6C0BG62_9ZZZZ (NFACT-R_1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BG62_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 1.320e-16
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   16 LVAIGANARENWDLI--TDSEPEHIWVHLNSFPSPHVVIRSSNPSISE---IEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKYV 303
            ++ +G NA ENW+LI        +IW HL+  PS HV+    N  + E   I + A LCK  SK K +KN+KV+YT I N+K    +G V     +KCKY+
Sbjct:   10 VIKVGENAMENWNLIDIAKKNDNNIWFHLDKHPSGHVICFVKNEGVIEKNVILYCATLCKEQSKQKHMKNVKVIYTEIKNVKKKGNVGEVET---KKCKYI 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1337.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6C0CL68_9ZZZZ7.130e-2950.00NFACT-R_1 domain-containing protein n=2 Tax=viral ... [more]
A0A6C0KD90_9ZZZZ7.010e-2448.89NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]
A0A5E8CL93_9ZZZZ3.700e-2342.86NFACT-R_1 domain-containing protein n=1 Tax=seawat... [more]
X0V946_9ZZZZ1.760e-2149.41NFACT-R_1 domain-containing protein (Fragment) n=1... [more]
A0A6C0EBF0_9ZZZZ5.960e-2141.84NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]
A0A6C0E1A8_9ZZZZ5.130e-1937.76NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]
A0A0N9QJ39_CEV011.240e-1845.54DUF814 domain containing protein n=1 Tax=Chrysochr... [more]
A0A6C0JSR5_9ZZZZ3.940e-1838.78NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]
A0A6C0BRR2_9ZZZZ2.130e-1737.89NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]
A0A6C0BG62_9ZZZZ1.320e-1640.59NFACT-R_1 domain-containing protein n=1 Tax=viral ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1337contigP-littoralis_Contig1337:24756..25067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5722.XP_001330141.1
PFAMsDUF814
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.22e-13
EggNOG OGsCOG1293@1|root,2SCHS@2759|Eukaryota
DescriptionDomain of unknown function (DUF814)
Cds size312
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.3752475-CDS-P-littoralis_Contig1337:24755..250671680789614.3752475-CDS-P-littoralis_Contig1337:24755..25067Pylaiella littoralis U1_48CDSP-littoralis_Contig1337 24756..25067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1337.6.1prot_P-littoralis_Contig1337.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1337 24756..25067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1337.6.1

>prot_P-littoralis_Contig1337.6.1 ID=prot_P-littoralis_Contig1337.6.1|Name=mRNA_P-littoralis_Contig1337.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MDDSPLVAIGANARENWDLITDSEPEHIWVHLNSFPSPHVVIRSSNPSIS
EIEFAAELCKANSKYKKIKNIKVMYTRIDNLKLGDEIGSVNILSKRKCKY
VIP*
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mRNA from alignment at P-littoralis_Contig1337:24756..25067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1337.6.1 ID=mRNA_P-littoralis_Contig1337.6.1|Name=mRNA_P-littoralis_Contig1337.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1337:24756..25067+ (Pylaiella littoralis U1_48)
ATGGACGACTCACCACTTGTGGCCATTGGAGCGAATGCTCGAGAAAATTG GGATCTCATAACTGATTCGGAACCTGAACATATATGGGTTCATCTAAACT CTTTCCCTAGTCCACATGTTGTTATAAGATCAAGTAATCCAAGTATAAGT GAGATTGAGTTCGCCGCTGAGCTCTGTAAGGCCAATTCCAAATACAAAAA GATAAAAAACATCAAAGTCATGTATACAAGAATTGATAATTTGAAACTAG GTGATGAAATTGGGTCTGTAAATATCTTATCTAAGCGTAAGTGTAAATAT GTGATACCATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1337:24756..25067+

>mRNA_P-littoralis_Contig1337.6.1 ID=mRNA_P-littoralis_Contig1337.6.1|Name=mRNA_P-littoralis_Contig1337.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1337:24756..25067+ (Pylaiella littoralis U1_48)
ATGGACGACTCACCACTTGTGGCCATTGGAGCGAATGCTCGAGAAAATTG
GGATCTCATAACTGATTCGGAACCTGAACATATATGGGTTCATCTAAACT
CTTTCCCTAGTCCACATGTTGTTATAAGATCAAGTAATCCAAGTATAAGT
GAGATTGAGTTCGCCGCTGAGCTCTGTAAGGCCAATTCCAAATACAAAAA
GATAAAAAACATCAAAGTCATGTATACAAGAATTGATAATTTGAAACTAG
GTGATGAAATTGGGTCTGTAAATATCTTATCTAAGCGTAAGTGTAAATAT
GTGATACCATAA
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