mRNA_P-littoralis_Contig1331.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1331.11.1
Unique NamemRNA_P-littoralis_Contig1331.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.340e-30
Identity = 62/126 (49.21%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 378
            G LRNGA+PVEYQV  TLRWLAGG + +   GH+IA+STAY     VI A+NAC  L C+WPE + D    A  F +RS+     +  G+   L  P  +AE  G   AQL+LQ  QE  R ELPG
Sbjct:    2 GLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.770e-24
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGLF 285
            G LRNGA+PVEYQV  TLRWLAGG + +   GH+IA+STAY     VI A+NAC  L C+WPE + D     +   + +   V+ KCVGAMDGLF
Sbjct:   99 GLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLF 192
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.420e-23
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 378
            G+LRNG +PVE+Q+   LR+LAGG + ++  G++IA+STAY    RVI AIN    L+C WPE +   D     +  RSTN VI  CVGAMDGLF    +  L  H   +      ++GF     G
Sbjct:   95 GALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQG 219
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.830e-23
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGLF 285
            G LR GA+PVEYQ+  TLRWLAGG + +   GH+IA+STAY     VI A+NAC  L C+WPE + D               V+ KCVGAMDGLF
Sbjct:   99 GLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLF 178
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.850e-23
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGLF 285
            G+LRNGA+PVE+Q+  TLR+LAGG + ++   ++IAKSTAY    RVI AIN    L C+WP    D ++ A  +  RSTN VI +CVGAMDGLF
Sbjct:   99 GALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLF 192
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.800e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 GSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHMIAKSTAY 123
            G LRNGA+PVEYQV  TLRWLAGG   +   GH+IA+STAY
Sbjct:   99 GLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP)

HSP 1 Score: 51.6 bits (122), Expect = 3.120e-5
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:   10 RNGAVPVEYQV--GNTLRWLAGGQMLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNHVIAKCVGAMDGL 282
            R G  P+  +V    TLR+LAGG  LDI+    ++ ++ Y+   + I AI  C  L  + P    + +  AA F   S+  V+  CVG +DG+
Sbjct:   27 RTGVAPISEEVVLHCTLRYLAGGSYLDIRDVAQLSVASFYRCLNKGIFAILNCTELAIQLPTTPREIECAAAEFAKSSSEGVLDGCVGCVDGM 119
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BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.540e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:  278 GFFVRTPRPNSRDTHEPNSFYSGHKKGFGMNFQA 379
            G FVR  +P++++  EPN +Y+GHKKGFGMNFQA
Sbjct:  179 GLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1331.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J9B3_9PHAE2.340e-3049.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA1_9PHAE3.770e-2453.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F2_9PHAE2.420e-2342.86DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE4.830e-2351.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE6.850e-2353.68DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE6.800e-968.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
G4ZVV4_PHYSP3.120e-533.33DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5L6B6_9PHAE4.540e-561.76DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1331contigP-littoralis_Contig1331:32724..33102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10743T0
Model size379
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.71e-07
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.5140054-UTR-P-littoralis_Contig1331:32723..327981680789613.5140054-UTR-P-littoralis_Contig1331:32723..32798Pylaiella littoralis U1_48UTRP-littoralis_Contig1331 32724..32798 +
1680789613.5362928-UTR-P-littoralis_Contig1331:33047..331021680789613.5362928-UTR-P-littoralis_Contig1331:33047..33102Pylaiella littoralis U1_48UTRP-littoralis_Contig1331 33048..33102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.5252628-CDS-P-littoralis_Contig1331:32798..330471680789613.5252628-CDS-P-littoralis_Contig1331:32798..33047Pylaiella littoralis U1_48CDSP-littoralis_Contig1331 32799..33047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1331.11.1prot_P-littoralis_Contig1331.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1331 32799..33047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1331.11.1

>prot_P-littoralis_Contig1331.11.1 ID=prot_P-littoralis_Contig1331.11.1|Name=mRNA_P-littoralis_Contig1331.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MLDIKQGHMIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGF
NSRSTNHVIAKCVGAMDGLFRPHPEAELPGHT*
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mRNA from alignment at P-littoralis_Contig1331:32724..33102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1331.11.1 ID=mRNA_P-littoralis_Contig1331.11.1|Name=mRNA_P-littoralis_Contig1331.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=379bp|location=Sequence derived from alignment at P-littoralis_Contig1331:32724..33102+ (Pylaiella littoralis U1_48)
GGGAGCCTTCGCAACGGTGCGGTCCCTGTAGAGTACCAGGTCGGGAATAC
CCTGCGGTGGTTGGCTGGTGGTCAAATGCTCGACATCAAGCAAGGCCATA
TGATCGCGAAGAGCACGGCATACCAGACGGCCGTCCGTGTCATCAAGGCG
ATCAATGCCTGTGAGGCGCTGGAATGCCGATGGCCCGAGAAACAGACGGA
TTACGACAGCATCGCGGCCGGGTTCAACAGCCGCAGCACGAACCATGTGA
TCGCCAAGTGCGTGGGAGCCATGGACGGGCTTTTTCGTCCGCACCCCGAG
GCCGAACTCCCGGGACACACATGAGCCCAACTCCTTCTACAGTGGCCACA
AGAAGGGTTTCGGGATGAACTTCCAGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1331:32724..33102+

>mRNA_P-littoralis_Contig1331.11.1 ID=mRNA_P-littoralis_Contig1331.11.1|Name=mRNA_P-littoralis_Contig1331.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1331:32724..33102+ (Pylaiella littoralis U1_48)
ATGCTCGACATCAAGCAAGGCCATATGATCGCGAAGAGCACGGCATACCA
GACGGCCGTCCGTGTCATCAAGGCGATCAATGCCTGTGAGGCGCTGGAAT
GCCGATGGCCCGAGAAACAGACGGATTACGACAGCATCGCGGCCGGGTTC
AACAGCCGCAGCACGAACCATGTGATCGCCAAGTGCGTGGGAGCCATGGA
CGGGCTTTTTCGTCCGCACCCCGAGGCCGAACTCCCGGGACACACATGA
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