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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2193 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1245 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789613.4492142-UTR-P-littoralis_Contig1331:28394..28414 | 1680789613.4492142-UTR-P-littoralis_Contig1331:28394..28414 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1331 28395..28414 - |
| 1680789613.4718134-UTR-P-littoralis_Contig1331:29659..30514 | 1680789613.4718134-UTR-P-littoralis_Contig1331:29659..30514 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1331 29660..30514 - |
| 1680789613.484484-UTR-P-littoralis_Contig1331:31612..31685 | 1680789613.484484-UTR-P-littoralis_Contig1331:31612..31685 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1331 31613..31685 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789613.4589865-CDS-P-littoralis_Contig1331:28414..29659 | 1680789613.4589865-CDS-P-littoralis_Contig1331:28414..29659 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1331 28415..29659 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1331.9.1 >prot_P-littoralis_Contig1331.9.1 ID=prot_P-littoralis_Contig1331.9.1|Name=mRNA_P-littoralis_Contig1331.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=415bp
MSPHLLSPALHLQSRPPLFHLRASSSPFTMPAAAPAPSSTTYSPSPAAGA
ALTTRAPPDGAKTVHAKPSATSSSLAPSVPPVVRASTSSATTSSPAAATS
TPAATGAPPPASAPPQYKYASGDNAFLHCTVGFLQARCRDSSTPFAGLQQ
LLDLANRHRLPPSTSTIGDLLAYDHFKRCNTAGQALLLRLILYLRSSSSV
FHDLPVPASHLPHGGAPVDSSPRRSHTQHATRGRGTSPRGRNAPSSSRRT
PNSHGPDGASDRRQEGKSDRNDRSRSSSSGSNKRQVDEVFVSSDVAVSEV
DSVSSVVVPLEASSHDTLSPPAASLAFRFAQIQLDEHARTLQNLHATHTS
PPGTPPRHHASTTPSPASNAAQLQLLTQILASMQHQLSPAPAQTAPQSHP
PHNAPFQQHTPLPP* back to topmRNA from alignment at P-littoralis_Contig1331:28395..31685- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1331.9.1 ID=mRNA_P-littoralis_Contig1331.9.1|Name=mRNA_P-littoralis_Contig1331.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3291bp|location=Sequence derived from alignment at P-littoralis_Contig1331:28395..31685- (Pylaiella littoralis U1_48)
AATATCATCGTCCATCAGGAACTGCAGTGCACCGGGGTGAGCACTACTGG
CTGCGAACCTATCGCGTGACAAAGTGAGTGTGATCTAGTTTCCACTTCAC
ATCTGGCGTTGGCGAATAGAGGCACCGATCGTTTGCTCATCTGGCATCTG
GTTCTGATTTCTCAAAAAAAACTGAGGTCGCTCCTCACTGAAATCAGTAT
ACAAAATCGACAGCTGCCTCAGCTCCCGATTCGGTGTCACCACGCGTGTT
CATCCTCACACACTCTTTCCCCATTCGCTTCACTGCTCCTCTCTTGGGAT
CAAGAGAGGGACTCAACCCAGTAGATAGCCAGCGCCCTACTCTCGCGCTC
GCTCTGCTTTCATCGCTGCCCATGTTCACATGGCGTAGACATGAGGTGCT
CATGCAGGAGCATCCAGCGCTGATTAAATTTTTTTTTGCCGAAAACAATC
CTCTTGATTTTAGTGGGCTCGATTTGCCATCACCCATAAATCAAGAGCGT
GACCCGATTTCGGGCCTTGTGGATATCCTTCAACTTACTGGCAATCTCCT
TCTTCCTTCTTCGAAGATCACCCCTTTCCTTTTCACGCGCACCTGCCGCG
ACGATAGTGCTTTACCCACTGCTGTACGACCTCATCACCGTGTTGGCAAG
CGCCTTTCAACCACGAGCCGTGCTGCTGACTGGCCTGTAGTTATATCGGA
TGTGCTTCCATCGACCACACTTGCCCAGCATTTGTTGTTTGGTTTAGCGG
GACCTGAAGTACGTCATGGCCGTCTATGGCTGACGCAGCGGTTCACACCG
CTTTTTGGATTTGTGCATGGAAGCAACTCGGTTGCATTGCCGGATGCCCT
GCGTCGTCTTCCTGAACAACCACTGCGCTTCACGCGTGGAAGCGAGGCCC
TGTTCCACCAAGCGCGAACCGAGTACTGGCTTACTCTGTTTGCTTCGCCG
CGGCCTTCAGATCAAGAGCCTGCTGCGAGCATGTCATCTCGGACAACTGA
TTTTTATATGCTCTCAACTGCTGTATGGCCCTGGAGAAGTGTAATTTTGC
AGGCCTTTTTGAGTTCGCTCTCCACTGCCGCCCGCAATTTTACCGCGCCC
TCTTTTACTGCCGCGGCCCCTTTGTCTCCCGTTTTTTTTTCCTCCACCTT
TCGATCATCATCTGGCCCCAGCCCGATGGACGCCACCGACGGCCGTGCCC
ACGCACGTGACGACGACGGCCTCATGGACTTCGAGCCGGACGAGCCTGAG
GACACCGCCGCTGCTGCTGCTGTGTCCAAGGCCGCTGCAGCCGCCGCTCT
TGCTGCCGCTGCCGCCACCGCTGCTGCCGCTGCTGCTGTGCCGGACGCCG
CTGCAGCTGCTGCTGCCGCTGCCATACCCGAGACTGCTACAGCCGCCACC
GCAGCCGCTGCCGCTGCTGCTGCTCTCACCGACTCCCCTGCTCCCGCGCC
TTGTGCTGCCGCTGTAGCCGCAGCTACAACCGCCGTTCCTGCTCCAGCCT
CCTCTTCGGGTTCTCCTTCGACTCCGCCCGCTGACGATCTGGATCTCCAG
GCCCAGATCGACGCCGCCACCCTGGCCCACGTCCTTTCTCTTAAGGACTC
AGTGGATATCGACGACGACATCGCCATCAACAAGCTCCAGGAGGAGGTCC
TGGAGGAGGAAGCTCGGGGCCAACGCGCACGTGCGGCAGGAGAGGCCCTG
GCCGAAGCAGAACGTGTTCGCTCGCGCCGCGGAGGCCGCTGCAGCCAAGA
AAGCCGCAGCTGATGATGCCAAACGTGAGGCTGCTGCCGCCGCGGCCACA
GAGGCCCGCAAGCAAGCTTTGCGGCTGAAATTAATACACCTCAAGCGCGC
CGCCGCCACTCAAGAGGCTGCCAACGCCGACCGCCGGGCCAAGGAAGTTG
TTCGCCGGGCTGCTGTCCTTGCCCTCTCTTCTGCCGCCCGCGCTCCGCCT
GCCGTCAAGGCCGCCCCTCTTCCGTCTTCTTCGGCGCCGTCTTCCTCGTC
TCTTTCTGCATCGACCTCACCCGCTGATGTCACCGCACCTTCTGTCGCCC
GCGCTCCATCTGCAGTCAAGACCGCCCCTCTTCCATCTTCGCGCTTCTTC
ATCGCCGTTCACCATGCCCGCCGCCGCGCCAGCGCCCTCTTCGACGACTT
ACTCGCCCTCTCCAGCTGCCGGCGCCGCCTTGACCACCAGAGCCCCCCCT
GACGGCGCCAAGACCGTCCACGCCAAGCCTTCCGCCACTTCTTCGTCGTT
AGCTCCGTCTGTGCCCCCGGTCGTCCGCGCTTCGACTTCTTCCGCCACCA
CGTCCTCCCCTGCCGCCGCGACTTCTACACCTGCTGCTACCGGAGCCCCG
CCGCCCGCTTCCGCGCCACCGCAATACAAATACGCAAGTGGCGACAACGC
CTTCCTGCACTGCACAGTGGGCTTCCTCCAGGCTCGCTGCCGCGATTCGT
CTACTCCCTTCGCCGGTCTCCAACAGCTCCTGGATCTGGCCAACCGTCAC
CGTCTGCCTCCGTCAACCAGTACAATCGGTGACCTTCTGGCATATGACCA
CTTCAAGCGTTGTAACACCGCGGGCCAAGCCCTTCTCTTGCGGCTGATTC
TCTACCTGCGGTCGTCTTCTTCGGTGTTCCACGACCTCCCGGTTCCTGCC
TCACACCTGCCACACGGCGGGGCCCCCGTCGATTCATCTCCGCGTCGCTC
CCACACGCAACACGCCACACGCGGCCGGGGCACTTCGCCTCGCGGTCGTA
ACGCCCCCTCGAGCTCGCGAAGAACACCGAACAGCCACGGCCCGGATGGA
GCCTCGGACCGCCGCCAGGAGGGAAAGTCGGACCGGAATGACCGCAGCCG
TTCCAGCTCCTCCGGTTCCAACAAAAGGCAAGTCGATGAGGTGTTTGTGA
GTTCTGATGTAGCGGTTTCGGAGGTGGATAGTGTGTCGTCTGTTGTGGTT
CCGTTGGAAGCAAGTTCGCATGACACCCTTTCGCCTCCGGCAGCGTCGCT
CGCCTTTCGTTTCGCTCAAATACAACTCGACGAGCACGCTCGCACATTAC
AGAACTTGCACGCCACCCACACCTCACCCCCCGGCACTCCGCCGCGGCAC
CATGCCTCAACCACCCCCTCTCCGGCCTCCAATGCTGCACAACTGCAGTT
GCTTACCCAAATATTAGCTTCCATGCAGCACCAGCTTTCCCCCGCCCCTG
CGCAAACAGCGCCGCAGTCTCATCCGCCACACAATGCCCCCTTTCAGCAA
CACACCCCCCTGCCGCCGTAGAATCGCCCGCAGTACCACCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1331:28395..31685- >mRNA_P-littoralis_Contig1331.9.1 ID=mRNA_P-littoralis_Contig1331.9.1|Name=mRNA_P-littoralis_Contig1331.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig1331:28395..31685- (Pylaiella littoralis U1_48)
ATGTCACCGCACCTTCTGTCGCCCGCGCTCCATCTGCAGTCAAGACCGCC
CCTCTTCCATCTTCGCGCTTCTTCATCGCCGTTCACCATGCCCGCCGCCG
CGCCAGCGCCCTCTTCGACGACTTACTCGCCCTCTCCAGCTGCCGGCGCC
GCCTTGACCACCAGAGCCCCCCCTGACGGCGCCAAGACCGTCCACGCCAA
GCCTTCCGCCACTTCTTCGTCGTTAGCTCCGTCTGTGCCCCCGGTCGTCC
GCGCTTCGACTTCTTCCGCCACCACGTCCTCCCCTGCCGCCGCGACTTCT
ACACCTGCTGCTACCGGAGCCCCGCCGCCCGCTTCCGCGCCACCGCAATA
CAAATACGCAAGTGGCGACAACGCCTTCCTGCACTGCACAGTGGGCTTCC
TCCAGGCTCGCTGCCGCGATTCGTCTACTCCCTTCGCCGGTCTCCAACAG
CTCCTGGATCTGGCCAACCGTCACCGTCTGCCTCCGTCAACCAGTACAAT
CGGTGACCTTCTGGCATATGACCACTTCAAGCGTTGTAACACCGCGGGCC
AAGCCCTTCTCTTGCGGCTGATTCTCTACCTGCGGTCGTCTTCTTCGGTG
TTCCACGACCTCCCGGTTCCTGCCTCACACCTGCCACACGGCGGGGCCCC
CGTCGATTCATCTCCGCGTCGCTCCCACACGCAACACGCCACACGCGGCC
GGGGCACTTCGCCTCGCGGTCGTAACGCCCCCTCGAGCTCGCGAAGAACA
CCGAACAGCCACGGCCCGGATGGAGCCTCGGACCGCCGCCAGGAGGGAAA
GTCGGACCGGAATGACCGCAGCCGTTCCAGCTCCTCCGGTTCCAACAAAA
GGCAAGTCGATGAGGTGTTTGTGAGTTCTGATGTAGCGGTTTCGGAGGTG
GATAGTGTGTCGTCTGTTGTGGTTCCGTTGGAAGCAAGTTCGCATGACAC
CCTTTCGCCTCCGGCAGCGTCGCTCGCCTTTCGTTTCGCTCAAATACAAC
TCGACGAGCACGCTCGCACATTACAGAACTTGCACGCCACCCACACCTCA
CCCCCCGGCACTCCGCCGCGGCACCATGCCTCAACCACCCCCTCTCCGGC
CTCCAATGCTGCACAACTGCAGTTGCTTACCCAAATATTAGCTTCCATGC
AGCACCAGCTTTCCCCCGCCCCTGCGCAAACAGCGCCGCAGTCTCATCCG
CCACACAATGCCCCCTTTCAGCAACACACCCCCCTGCCGCCGTAG back to top
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