mRNA_P-littoralis_Contig1002.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1002.11.1
Unique NamemRNA_P-littoralis_Contig1002.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1002contigP-littoralis_Contig1002:17092..18088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789343.846844-CDS-P-littoralis_Contig1002:17091..172711680789343.846844-CDS-P-littoralis_Contig1002:17091..17271Pylaiella littoralis U1_48CDSP-littoralis_Contig1002 17092..17271 -
1680789343.855969-CDS-P-littoralis_Contig1002:17998..180881680789343.855969-CDS-P-littoralis_Contig1002:17998..18088Pylaiella littoralis U1_48CDSP-littoralis_Contig1002 17999..18088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1002.11.1prot_P-littoralis_Contig1002.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1002 17092..18088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1002.11.1

>prot_P-littoralis_Contig1002.11.1 ID=prot_P-littoralis_Contig1002.11.1|Name=mRNA_P-littoralis_Contig1002.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
IARIDHSILIGKDSTQVRSLVGVSSHYSLEKLYEFLDAEGAATHVVFYDK
REGSGSKQTGERVIHRNGVFRGINGLFLTLMVLRTAVPLV
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mRNA from alignment at P-littoralis_Contig1002:17092..18088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1002.11.1 ID=mRNA_P-littoralis_Contig1002.11.1|Name=mRNA_P-littoralis_Contig1002.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=997bp|location=Sequence derived from alignment at P-littoralis_Contig1002:17092..18088- (Pylaiella littoralis U1_48)
ATCGCGAGGATCGATCACTCCATCCTTATCGGCAAGGATTCAACACAAGT
TCGTAGTCTTGTGGGAGTGAGCTCCCACTACTCTTTGGAGGTGAGATTCA
TGCCACTGCTGTACAAGTAGCTGCAGCAGGAGCGTCGAACTGCGATGGTA
GGCATGCACAGCTCAGAGAACAGGAGAAGTCCTTACCTCAACCAAAATGG
GGCTTTTCGCCCTTGTTCCCCTTGTTCGCCCTTGATTCGTGCTGCCGGTA
ACATTTCAGGAAAGTCACTTTCATAAACTCGCCCCATTTTTGAAGTAAGA
CATCGCGTTAACATCCTCCCTCGTGTAAAAAGGGAACGTGTACAATCGTG
TTTGAAAGGGTAAGATAATGGGGAAAGGCTTGGCTCTCACTAGTGTAGAG
TGCCTCGCATGACACATGAATACCATTACCATAATGCGCAAGCACCTTTC
AGATTTTCAATTTTCAGAAGATCATCCCCACCGTGGTTTTTTGCTGGTAT
TTTTTGCTGGATCTTCAGGGGTTACCTAGGCCGCCGCCGCAGCCGGTCCA
ACCCGTTCGCTAATATAAGGCCCAGGGCTCGTTCTTTGGAGGCCGTGAAA
ATATTTGTGTTCGTGAAATGCTACAGATCGATGTATGACGTACTCCCGAC
GGAGCCGATGCCAGTATTGATTCCGTCGGGTATGTGAGCAAGGAGACTCC
TTCATGCCCCCTTTGTATTTCGCCTGCGCTTCCTCACACGAATATGCTCA
AGTACAGACGGCCGTCTGACCCGTTATTTTTATTGTGCGCGTGAACCCCC
GTATTACTTCCGAACAGAAGCTTTACGAATTTTTGGATGCAGAGGGCGCC
GCGACACATGTGGTGTTTTACGACAAACGAGAGGGCAGCGGATCGAAACA
AACTGGAGAAAGGGTCATCCATAGAAATGGCGTTTTTCGCGGTATCAATG
GTTTGTTTTTGACGCTGATGGTGTTGCGCACTGCCGTTCCGCTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1002:17092..18088-

>mRNA_P-littoralis_Contig1002.11.1 ID=mRNA_P-littoralis_Contig1002.11.1|Name=mRNA_P-littoralis_Contig1002.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1002:17092..18088- (Pylaiella littoralis U1_48)
ATCGCGAGGATCGATCACTCCATCCTTATCGGCAAGGATTCAACACAAGT
TCGTAGTCTTGTGGGAGTGAGCTCCCACTACTCTTTGGAGAAGCTTTACG
AATTTTTGGATGCAGAGGGCGCCGCGACACATGTGGTGTTTTACGACAAA
CGAGAGGGCAGCGGATCGAAACAAACTGGAGAAAGGGTCATCCATAGAAA
TGGCGTTTTTCGCGGTATCAATGGTTTGTTTTTGACGCTGATGGTGTTGC
GCACTGCCGTTCCGCTGGTG
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